K14639

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14639

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K14639

Determination of introduced cDNA(s)

  • J013047I12 - Rice Full-length cDNAs - Original: J013047I12

    full reading [+] show sequence

    Nucleotide sequence: J013047I12 - full reading 
    GGGATTTGCA GGTTATTATA CTGAGTGCGT CGGCGAACAA GCTGGCGAAG 
    CTGAAGGGAC ACGCGGCGAC GTACGCGTCG CTGATCATGG AGGAGCTGGA 
    CCCGGACGAC CGCGGGTACA TCGAGATCTG GCAGCTGGAG ACGCTGCTGC 
    GCGGCATGGT GAGCGCGCAG GCGGCGCCGG AGAAGATGAA GCGGACGACG 
    TCGAGCCTCG CGAGGACGAT GATCCCGTCG CGGTACCGGA GCCCGCTGAA 
    GCGGCACGTG TCCAGGACGG TGGACTTCGT GCACGAGAAC TGGAAGCGGA 
    TCTGGCTCGT CGCGCTGTGG CTCGCCGTCA ACGTCGGCCT CTTCGCCTAC 
    AAGTTCGAGC AGTACGAGCG GCGCGCCGCG TTCCAGGTGA TGGGCCACTG 
    CGTGTGCGTG GCCAAGGGCG CCGCCGAGGT GCTCAAGCTC AACATGGCGC 
    TCATCCTCCT CCCCGTGTGC CGGAACACGC TCACCACGCT CAGGTCCACG 
    GCGCTCAGCC ACGTCATCCC CTTCGACGAC AACATCAACT TCCACAAGGT 
    GATCGCGGCG ACCATCGCCG CCGCCACCGC CGTCCACACG CTGGCGCACG 
    TCACCTGCGA CTTCCCGAGG CTGATCAACT GCCCCAGCGA CAAGTTCATG 
    GCGACGCTGG GGCCGAACTT CGGGTACAGG CAGCCGACGT ACGCCGACCT 
    GCTGGAGAGC GCCCCCGGCG TCACCGGCAT CCTCATGATC ATCATCATGT 
    CCTTCTCCTT CACGCTGGCC ACGCACTCCT TCCGCCGGAG CGTCGTCAAG 
    CTGCCGTCGC CGCTGCACCA CCTCGCCGGC TTCAACGCCT TCTGGTACGC 
    GCACCACCTC CTGGTGCTCG CCTACGTCCT CCTCGTCGTG CACTCCTACT 
    TCATATTCCT CACCAGGGAG TGGTACAAGA AAACGACATG GATGTACCTG 
    ATAGTCCCAG TGCTCTTCTA TGCATGCGAG AGAACGATCA GAAAAGTTCG 
    AGAGAACAAC TACCGCGTGA GCATCGTCAA GGCAGCGATT TACCCAGGAA 
    ATGTGCTCTC TCTTCACATG AAGAAGCCGC CGGGTTTCAA GTACAAGAGC 
    GGGATGTACC TGTTTGTGAA GTGCCCTGAT GTCTCTCCTT TCGAATGGCA 
    TCCCTTCTCC ATCACTTCTG CACCTGGAGA TGACTACCTG AGTGTGCATA 
    TCCGTACACT AGGTGACTGG ACGACTGAAC TCAGAAACCT GTTTGGGAAG 
    GCTTGCGAGG CACAGGTTAC TTCTAAGAAG GCTACCCTTT CAAGACTTGA 
    AACTACAGTT GTGGCGGACG CTCAGACAGA GGATACTAGG TTTCCTAAGG 
    TCCTTATTGA TGGGCCCTAT GGTGCACCGG CGCAAAACTA CAAGAAGTAT 
    GACATTCTTT TGCTTATTGG TCTTGGAATT GGTGCTACTC CTTTCATCAG 
    CATTCTGAAG GATCTGTTGA ACAACATTAA ATCCAACGAA GAGGTGGAAA 
    GCATACATGG TTCTGAGATA GGCAGCTTCA AGAACAATGG GCCAGGAAGA 
    GCTTACTTCT ACTGGGTGAC CAGAGAGCAA GGGTCCTTCG AGTGGTTTAA 
    AGGAGTCATG AACGATGTCG CTGAAAGTGA TCACAATAAT ATTATAGAGA 
    TGCGCAATTA CCTGACCAGC GTGTATGAAG AAGGCGACGC AAGGTCAGCT 
    TTGATTGCCA TGGTTCAGTC ACTTCAACAT GCCAAAAATG GTGTGGATAT 
    CGTCTCCGGC AGCAGGATTC GCACACATTT TGCGAGGCCT AACTGGAGAA 
    AGGTGTTCTC TGACTTGGCG AATGCCCACA AAAACTCACG CATAGGTGTT 
    TTCTATTGTG GATCCCCTAC ACTCACGAAA CAACTCAAGG ATCTTTCAAA 
    AGAATTCAGC CAGACAACCA CAACTAGATT CCACTTCCAC AAGGAAAACT 
    TTTAAGACCG TACCAAAGGA CGTCTAAACA GACTGCATAT ACTTGTATAG 
    GAAAGAAATA CGATAGCATT GGGATAGCAA ATATAGTCTT ACAAGTTTTG 
    CTCTACGATG GATTGTACAA AATATATGTT GAAAGCTAGT GTCACCATCG 
    TGCATAGATT CTGGAATGTT TACAGATATA TGTATTGGAA CAGTGGGAAT 
    GCATGTTAGA AAAATTGAGT TCCAGGTGGT GCGCCTTGAG CATGC

    Gene models with high sequence identity

    1. AT5G60010.1 [+] show detail - ferric reductase-like transmembrane component family protein
      E-value: 0; Score: 768.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ferric reductase, NAD binding 2.3e-46
    HMMPfam FAD-binding 8 4.6e-30
    HMMPfam Ferric reductase-like transmembrane component, N-terminal 1.2e-15
    ProfileScan Ferredoxin reductase-type FAD-binding domain 13.842
    FPrintScan Cytochrome b245, heavy chain 5.2e-21
    FPrintScan Cytochrome b245, heavy chain 5.2e-21
    FPrintScan Cytochrome b245, heavy chain 5.2e-21
    FPrintScan Cytochrome b245, heavy chain 5.2e-21
    superfamily Riboflavin synthase-like beta-barrel 3.1e-17
    superfamily Ferredoxin reductase-like, C-terminal NADP-li 1.6e-11
    HMMPanther RESPIRATORY BURST OXIDASE 0
    HMMPanther NADPH OXIDASE 0

    See the detailed result >

    AT5G60010.1

    Model type
    Protein coding
    Short Description
    ferric reductase-like transmembrane component family protein
    Computational Description
    ferric reductase-like transmembrane component family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: ferric reductase-like transmembrane component family protein (TAIR:AT3G45810.1); Has 1927 Blast hits to 1788 proteins in 283 species: Archae - 0; Bacteria - 154; Metazoa - 723; Fungi - 353; Plants - 523; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR