K14737

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K14737

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Original: K14737

Determination of introduced cDNA(s)

  • J013063O03 - Rice Full-length cDNAs - Original: J013063O03

    full reading [+] show sequence

    Nucleotide sequence: J013063O03 - full reading 
    GACTTTGCTT CGCTTGGGTT TCATCGTCGT CCCCTCCTCC TCCTTCCTTT 
    GACCTCGGCT CGATCGACCA TCCCGCGGAG GAGACGACGC CGCGGCGGCG 
    GCGGAGGACT CGCCGGCGGC GGGGATGGAC GTGCCGTGGC TGCTGGTGGC 
    GCACGGGTCG GTGACGGCGC TGGTGGTGGT GTCCTTCCTC TGCGGGCAGT 
    GGCCCATCTT CGAGGGCACC TTCGTGCAGC GCATCAACCA CTTCCTCACC 
    TTCGGCGCCT ACCACCACCT CCTGCGGCTC GTCCACGCGG CGTGCGGCAA 
    TGGGGCCAGG GATCTCGTCC TCGGCGTCGA GAGCTACTGC TGCGACCGGC 
    CCAACCCGAT CCTGCAGATT TTTTACGTTG CCATAATAGG GGTAACATAT 
    TTTATAATCG TCCAGACATC TTTCCAGTAC ATTCCTGGGT ACTATGTGAG 
    TGGACTGCAC AGATACCTGA GTATCGTGGC TGTTGCTATT GGTGCTTTAC 
    TCTTCGTGCT GACTAGCTTT TCTGATCCTG GAACTGTCAC TGCTGAGAAT 
    GTTTTCTCAA TATCTATCTG CCTATCCATA TGATGGCATC ATTTTTGAGG 
    AGAAAGAGTG TTCTACCTGC AAGATTGCCA GGCCAGCCAG GGCAAAGCAC 
    TGTAGAATAT GTGATAAATG TGTTGCACGG TTTGATCACC ACTGTGGATG 
    GATGAATAAC TGCATTGGGG AGAAAAATAC TCGCTATTTT GTGGCCTTTT 
    TAGTTTGGCA TTTCCTTATA TGTCTGTACG GAGCGGTTAT TCTTGGTTTC 
    ATTCTTGCTG GTGAATTAAA AGAAAGGAAA GTTGTCTACA TATTGACAGT 
    TTATTATGGC ATCGACAATT CATTCTCTGG GCTATTTCCA CATGTTGCAC 
    AGTGGCTGCT TGCTGTGCAT AACACACAGA TACTCTTAGC GGTCTTTTTG 
    GCTATAATTG CATTGCTCCT TGGTGGGTTT TGTGCTTACC ACACACATCT 
    TTGCTTAACA AATACAACAA CGAATGAGAC ATTCAAATGG CAAGACTATA 
    TTATGTGGAG GAAAAAGGTG AACGAGGAAA AGGCTGCTGC AAATGGTGAA 
    GTGCGCAAAT CGCCACCAAG CAAATGGAAG GCGTTTTTCT CTAGATCACA 
    TACTGAGGCC GATGAAACAA TTGTGAAAAA TAACATATAT GACAGAGGCA 
    TGATTAGAAA CATGTGCGAG GTGTTTGTCC CTTTGTCAGA ACGGCAGTCA 
    TTTTCCCGCA AGAAATCTGA TTGATCTGAA TGCTGTTGCA GCTTTGC

    Gene models with high sequence identity

    1. AT3G04970.1 [+] show detail - DHHC-type zinc finger family protein
      E-value: 6e-120; Score: 189.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN 6.5e-31
    HMMPfam Zinc finger, DHHC-type 4e-26
    ProfileScan Zinc finger, DHHC-type 25.445

    See the detailed result >

    AT3G04970.1

    Model type
    Protein coding
    Short Description
    DHHC-type zinc finger family protein
    Computational Description
    DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT5G50020.2); Has 5080 Blast hits to 5078 proteins in 251 species: Archae - 0; Bacteria - 0; Metazoa - 2181; Fungi - 755; Plants - 829; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR