K15026

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15026

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15026

Determination of introduced cDNA(s)

  • J013156P11 - Rice Full-length cDNAs - Original: J013156P11

    full reading [+] show sequence

    Nucleotide sequence: J013156P11 - full reading 
    GGTGAGGTGA GGTGAGTTGA GTTGGGGATT GATTGATTGA TTCGGATTGG 
    GAAGAAGAAG AAGCAGGGGA GCATGGGCAG CAAGTCGTAC CCGACGGTGA 
    GCGATGAGTA CCTGGCGGCC GTGGGCAAGG CGAAGCGCAA GCTCCGCGGC 
    CTCATCGCCG AGAAGAACTG CGCCCCACTC ATGCTCCGCC TCGCGTGGCA 
    CTCTGCTGGC ACCTTCGATG TGTCGTCGAG GACCGGCGGG CCCTTCGGCA 
    CCGTGAAGAA CCCCGGCGAG CAGTCCCACG CCGCCAACGC CGGCCTCGAC 
    ATCGCCGTCA GGCTTCTCGA CCCCATCAAG GACCAACTTC CCATCCTCTC 
    CTACGCCGAC TTCTACCAGC TTGCTGGCGT TGTGGCCGTC GAGGTCACCG 
    GCGGACCTGA GGTCCCCTTC CATCCGGGCA GGCAGGACAA GCCTGAGCCT 
    CCTCCTGAAG GCCGTCTTCC TGATGCCACA CAAGGTTCTG ACCACCTAAG 
    GCAGGTCTTT TCTGCGCAGA TGGGTTTGAG TGACAAGGAC ATAGTTGCTC 
    TTTCTGGTGG TCACACCCTG GGAAGATGCC ACAAGGAGAG ATCTGGCTTT 
    GAGGGAGCCT GGACGTCCAT CCCTTTGATC TTTGACAACT CTTACTTCAC 
    CGAGCTTGTG AGTGGCGAGA AGGAAGGCCT TCTTCAGCTG CCAAGTGACA 
    AAGCCCTCAT GGCTGACCCA GCCTTCCGTC CACTGGTGGA GAAATATGCT 
    GCGGATGAGG ACGCCTTCTT TGCGGATTAC GCCGAGGCCC ACCTCAAGCT 
    CTCTGAACTG GGATTTGCTG AGGAATAAGA AGCCTTTAGA GAGCGGGATA 
    TCCGCAAAAG ATTAATGCCG ATTTGTATTT TGCGCCTTAG AGTCAGTACG 
    ATCAAGACTG TCGTGGCGGT TGTAATAAAA ATTAGTGTGC TTTGGGCCAT 
    CTTTTTATGT GATTCCAATT GTCTTTCTCT TCATTCTTGC TTTGATGCTC 
    TTTGTCTGGA CCTCTAGACC GCCGTATTGT ACTGTGGAGT TTCAAAGTTA 
    CCAAGCTATT TGCTGTCAAG ATAACTATGG ATTGAATTCC CCTTGATGGA 
    TGAACCAACT GTTGTTGTTT GCCCGTTCTT CAGCTTTCGT TTGTGCGGCC 
    ATCGATCGCC ATGCGTTGCT TAAACCCATT TCTAGCTCCC CTACCCTGCT 
    GCATCCGCCC TCTTCTGCGC GATCGTTGGA TTGCGAGTGG TTGGCTGGTT 
    GCACGACTTG TGGAGACCGA AACAAATAAT TTTTGGTCAA ATTGATCGGT 
    GGTACTGTCG GAGCATCTAT TTTTTCTTTA GCTTAGATCG TATAATTGTA 
    GGATTGGGAT TTGTATATTA ATATATACAG GTCGATTAAA ACT

    Gene models with high sequence identity

    1. AT1G07890.8 [+] show detail - ascorbate peroxidase 1
      E-value: 2e-104; Score: 376.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Plant ascorbate peroxidase 3.7e-117
    FPrintScan Plant ascorbate peroxidase 3.7e-117
    FPrintScan Plant ascorbate peroxidase 3.7e-117
    FPrintScan Plant ascorbate peroxidase 3.7e-117
    FPrintScan Plant ascorbate peroxidase 3.7e-117
    FPrintScan Plant ascorbate peroxidase 3.7e-117
    FPrintScan Plant ascorbate peroxidase 3.7e-117
    FPrintScan Plant ascorbate peroxidase 3.7e-117
    FPrintScan Plant ascorbate peroxidase 3.7e-117
    FPrintScan Plant ascorbate peroxidase 3.7e-117
    FPrintScan Haem peroxidase, plant/fungal/bacterial 9.4e-27
    FPrintScan Haem peroxidase, plant/fungal/bacterial 9.4e-27
    FPrintScan Haem peroxidase, plant/fungal/bacterial 9.4e-27
    FPrintScan Haem peroxidase, plant/fungal/bacterial 9.4e-27
    FPrintScan Haem peroxidase, plant/fungal/bacterial 9.4e-27
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    HMMPfam Haem peroxidase, plant/fungal/bacterial 1.7e-45
    ProfileScan Haem peroxidase, plant/fungal/bacterial 15.208
    Gene3D no description 2.9e-41
    superfamily Haem peroxidase 1.2e-85

    See the detailed result >

    AT1G07890.8

    Model type
    Protein coding
    Short Description
    ascorbate peroxidase 1
    Curator Summary
    Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.
    Computational Description
    ascorbate peroxidase 1 (APX1); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: response to reactive oxygen species, response to salt stress, response to heat, hydrogen peroxide catabolic process, embryo development ending in seed dormancy; LOCATED IN: cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR