K15121

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15121

Determination of introduced cDNA(s)

  • J013000N18 - Rice Full-length cDNAs - Original: J013000N18

    full reading [+] show sequence

    Nucleotide sequence: J013000N18 - full reading 
    GAGGGTTCCA GAACCTTCTC GATCCCTCCT CCCCCTCTCC GCCTCCGCCT 
    CCGCCCTCCT CCGCTCCGAT CGCCGCCGGC TCGTCGCCGG TTTCATAAGC 
    CATGTTCAAG AAGCATGTTG ATGTAAAGGC TCTACAGCGT TTGTCGGGAG 
    CTGACAAAAA GAAGCTCAGA AGAACTGCCA AGGAAAGGTT CCCACAAGCA 
    TCTGATGCTG ACCTTGATGC CATCCTTCCT CCCAAGGTTG AGGTAACAGT 
    TGCTAAGTAC CCAAATAGGG TTCTTGTATA TGGCATAGAG GGAGAGTTCC 
    CAATGCTTTT CGACATTGAT GGAAGAGGCC ATGAGCTGTT TCCAACAGTT 
    TATGCACTCT GGAAGGTTCC CGATCTGTTG CCTGCTTTTA CACTTAAGGG 
    TGGTGAAGTC TCACGCTTCA TACTGGGGGG TGCCGATCTG ATGTTTCCTG 
    GTATTAGCAT ACCCCCAGAA GGGCTTCCTT CCTTTCAACC TGGCCAGCCA 
    TGGTCAGTAA AGGTTCCTGG TAATCCTGCT CCAATTGCTG TTGGGGCCAC 
    AACTATGAGC AGTAATGAAG CCTTAAAGGC AGGGTTACGT GGCAAGGCTT 
    TGCGGATTAC TCACTACTTT AAGGATTCAT TATGGGATTC TGCTGATGGT 
    CGCTATGTTC CAAATGAAGG ATTTTATGAG GACATTGTTG TTGAAGATCG 
    TAATTATGCT TCACCGTCTC AACCTGCTGA TTCTTCTGAA GATCATGTAG 
    AAGGCATGCA TGACAGTACC ATTGAAGGTG AAGAAGCTGC AGTTGATGTT 
    TCTGAGAGCC ATACCACAGA TCATGACATC CACGTTGAGG CCATAGAAGA 
    TTTAACTGCT GGTGTGAGTG AGGTGAAATT GCCTGAAGAT AATGCTACTG 
    AGGAACCAAC TGAGGAAAGG GAACATCAGA ATTTGTCTAC GGAAGAAATT 
    GACTCTCTTT TAGATAAATG TCTTCTGCAA GCTTTACACA CGAGTGTAAA 
    AGATAAAGAC CTTCCTATTC CTGGAAGTAC ATTGTGGTCA AATCACATAC 
    TCCCCTGCAG ACCTACAGGT GTTACTCTGG ATATTAAGAA GTCATCACAC 
    AAAAAGCTAT CCAAGTGGTT GCAATCAAAA TCTTCCGCTG GCCTTATTTC 
    ATCAAAAGAA GACAAGCATA AAAAGGAAGT CATGTTGCTT CGTATCAATC 
    GTGGGCATCC AGATTACATG GCCTTTAAAC CAGAAAAGAG GGTACAGGAG 
    CCTGTTGTAC AGCATGATAA TGTTGTTGCT GAAGGTAGCA GCACGAAGCA 
    ACTGGAAGTA GCAGAAACTT ATAAGCCAAG CTCTCATGTT AACCCCATAT 
    TTATGGCTGT TGGAGCGGAC ACGAGCAAGT ACTATAGTGC ATCAGAGGCA 
    TCTGACATAG TCTTCAGGTA CGTTGAAAAG GAAAATTTGG TTAAACAAAC 
    AGACAAGGCC AAAGTAGTTT TGGATGTTGC ATTATGCGAC GCTCTCTACA 
    AAGGAGCCAT CAAAAAGGGT TCAGCATACC CAACCGAGAT CCACAAGAGG 
    GACCTGGGGT CAACATTTTT AAACCGAATG CAGATTCACC ATAGAGTAGC 
    AAGAGGGAGC GAGGTGGTCA TTCGCAAGGG CGCCATACGA ACCATTCAGA 
    TCATGACAGA GAGAAGGCAA GGAAACAAGA AGATGACCCG GCTATCTGGA 
    TTGGAATGCT TCTTAATGGA TCCTGACTCG TTAGCTTCTG AGCTGCAGAA 
    GAAGTTTGCT TGCAGCACCA CCACAGCTGA GCTTCCAGGT AAGAAAGGGC 
    AACACGAGGT CTTGGTTCAA GGTGGAGTCA TCGATGACCT TGCAAAGCAC 
    CTTGTTGATC ATTACGGTGT TCCGAAGAGG TTTATTGAGG TTCTTGACAA 
    AACAAAGCGT TAGGGGACAG GACAGAAGCA GGCAGACTCT CAGTGCCGGA 
    GGAGCCTGAA GTATCTTCAG GGACAGCGCA GGAAGAGAAT GCAGACCAAT 
    GCTTAACGAT ATCAGGATTG TATTCTGTGA CTGCCATCAT CAGAAGAAAT 
    TATGAGAAGA TACCTCTTCT CACCACCTCT GGTTTTTATG CTTGGAAAAT 
    ACTTTTATCC TTTTTTGTGT TTACAGAAAA ATGAGTAGGG CTGTTCTGAC 
    TTCTGTCTGA AATTTTGGTG TGTACCCGTT CCTTTTTTGT AACGTTCTTT 
    TGGTGCCGTG TTCATTCTCC TGAAAAAGCA CCTTTTTTGT GTGAGATACG 
    TGTTACGTTT CGTTAGTGAC AGACAGGGTT TGACGCTTTT TAACATGGCA 
    TAGTGCTATG GTTAATTCAA TACATGCTTT CAT

    Gene models with high sequence identity

    1. AT1G71350.1 [+] show detail - eukaryotic translation initiation factor SUI1 family protein
      E-value: 0; Score: 720.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LIGATIN 3.7e-165
    HMMPanther LIGATIN 3.7e-165
    HMMPfam Translation initiation factor SUI1 1.4e-15
    superfamily Translation initiation factor SUI1 2.5e-26
    superfamily SWIB/MDM2 domain 5.2e-18
    superfamily Pseudouridine synthase/archaeosine transglycosylase-like 1.4e-12
    Gene3D no description 1.7e-06
    ProfileScan Translation initiation factor SUI1 17.028
    ProfileScan Pseudouridine synthase/archaeosine transglycosylase 12.979
    HMMTigr Uncharacterised domain 2 1.2e-09

    See the detailed result >

    AT1G71350.1

    Model type
    Protein coding
    Short Description
    eukaryotic translation initiation factor SUI1 family protein
    Computational Description
    eukaryotic translation initiation factor SUI1 family protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Translation initiation factor SUI1 (InterPro:IPR001950), SWIB/MDM2 domain (InterPro:IPR003121), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein (TAIR:AT1G09150.1); Has 1013 Blast hits to 993 proteins in 255 species: Archae - 62; Bacteria - 0; Metazoa - 354; Fungi - 333; Plants - 100; Viruses - 0; Other Eukaryotes - 164 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR