K15134

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15134

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15134

Determination of introduced cDNA(s)

  • J033023C17 - Rice Full-length cDNAs - Original: J033023C17

    full reading [+] show sequence

    Nucleotide sequence: J033023C17 - full reading 
    GTAGCCACAA CGGCCAAGCA GAAAGTGCAA TTAGCCTGCA GGCAGCTAAT 
    CAGTAGTAGC TTGCTAGCCA TGGCTTCTGC AACTAATTCT TCACTTAGCT 
    TAATGCTGCT GGTGGCTGCA GCTATGGCGT CAGTGGCATC GGCGCAGCTC 
    TCGGCGACGT TCTATGACAC GTCGTGCCCC AATGCGTTGT CCACCATCAA 
    GAGCGTCATA ACAGCCGCCG TGAACAGCGA GGCTCGCATG GGGGCGTCGC 
    TGCTCAGGCT GCACTTCCAC GACTGCTTCG TCCAAGGGTG CGACGCGTCA 
    GTTCTGCTGT CCGGGCAGGA GCAGAATGCT GGCCCGAACG TGGGGTCGCT 
    GAGGGGATTC AGCGTCATCG ACAACGCCAA GGCGCGGGTG GAGGCCATCT 
    GCAACCAGAC CGTCTCCTGC GCCGACATCC TCGCCGTCGC CGCCCGTGAC 
    TCCGTCGTCG CGCTGGGAGG GCCATCATGG ACGGTTCTGT TGGGGAGAAG 
    GGACTCCACC ACTGCAAGCG AGGCCTTGGC AAATACCGAC CTCCCTGCCC 
    CTTCCTCTAG CCTCGCAGAA CTTATCGGCA ATTTCTCCAG AAAGGGACTC 
    GACGCAACCG ACATGGTTGC TCTCTCAGGA GCACACACGA TCGGGCAGGC 
    GCAGTGCCAG AATTTCAGGG ACAGGATCTA CAACGAGACC AACATCGATT 
    CCGCCTTCGC GACGCAACGC CAGGCCAACT GCCCACGGCC GACGGGCAGC 
    GGCGACAGCA ACCTGGCGCC GCTGGACACG ACGACGCCCA ACGCCTTCGA 
    CAACGCCTAC TACAGCAACC TGCTGTCCAA CAAGGGGCTC CTGCACTCCG 
    ACCAGGTGCT CTTCAACGGC GGCAGCGCGG ACAACACGGT CAGGAACTTC 
    GCGTCCAACG CGGCGGCGTT CAGCAGCGCC TTCACGACGG CCATGGTGAA 
    GATGGGGAAC ATCTCGCCGC TGACCGGGAC GCAGGGGCAG ATCAGGCTCA 
    GCTGCTCCAA GGTGAACTCC TAATTAAGGA GTAGTATGAC GGGATGCGTT 
    CGTTGCTGGA AGCAAATCGT GTCGACGACG ACATAAACGG GCCACACCAC 
    ATATACCCAT ATATGTAGTA TAACCACAAG TATAGGTACG GTGGTGTTGT 
    ACTAGTACAC GTAAAGTATA TGGCAGCCAG CTCGCTCTGG CAATCCATCA 
    AGTGTATGGA GCAGAGCAGC CATGGCATTA GCACCTAGTA TACCAAAATA 
    AAAGCTCCTC ATGCGAAGGC ATGCATGGAG GATTAATGAA CTGTTACCTT 
    CAC

    Gene models with high sequence identity

    1. AT5G05340.1 [+] show detail - Peroxidase superfamily protein
      E-value: 7e-102; Score: 367.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Haem peroxidase 2.2e-111
    Gene3D no description 2.4e-57
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    ProfileScan Haem peroxidase, plant/fungal/bacterial 74.46
    HMMPfam Haem peroxidase, plant/fungal/bacterial 8.2e-81
    FPrintScan Plant peroxidase 7.5e-73
    FPrintScan Plant peroxidase 7.5e-73
    FPrintScan Plant peroxidase 7.5e-73
    FPrintScan Plant peroxidase 7.5e-73
    FPrintScan Plant peroxidase 7.5e-73
    FPrintScan Plant peroxidase 7.5e-73
    FPrintScan Plant peroxidase 7.5e-73
    FPrintScan Plant peroxidase 7.5e-73
    FPrintScan Plant peroxidase 7.5e-73
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-36
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-36
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-36
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-36
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.9e-36

    See the detailed result >

    AT5G05340.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: protein binding, peroxidase activity; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: apoplast, cell wall; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT5G58400.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR