K15238

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15238

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15238

Determination of introduced cDNA(s)

  • J023033L15 - Rice Full-length cDNAs - Original: J023033L15

    full reading [+] show sequence

    Nucleotide sequence: J023033L15 - full reading 
    GAGCGATTTC ATCCAAGCAC CACGCCGCCG CCGCCGTCGA AGCCGATCTC 
    CTGCGCGCGG AGCGGATCGC CTCTGTCAGT CACCAGCTAT ACAGTATGAG 
    TTCACTGGAG AGTGCAAGAG CAGATCTTGC TCTGCTTATT TTATACCTAA 
    ACAAGGCTGA AGCAAGAGAT AAGATCTGTA GAGCTATACA ATATGGCTCG 
    AAATTTGTGA GTAATGGACA ACCAGGGCCT GCACAGAATG TTGACAAGTC 
    GACTAGTCTA GCTCGTAAAG TTTTCCGACT TTTTAAGTTT GTTAATGATC 
    TGCATGCTTT GATTAGTCCT CCTGCCAAAG GAACTCCACT ACCCCTGATC 
    TTACTTGGAA AGTCGAAGAA TGCACTGCTA TCAACTTTCC TCTTTCTGGA 
    CCAAATTGTA TGGGCTGGAA GGACAGGAAT ATACAAGAAC AAGGAGCGAG 
    CAGAATTCCT CAGCAAGATA GCATTTTATT GCTTCCTGGG TTCTAACACA 
    TGTACTAGTA TTATTGAGGT AGCCGAGCTT CAGCGGCTAT CCAAGTCGAT 
    GAAGAAACTA GAGAAGGAGC TTAAACACCA GGAGCTGTTA AAGAACGAGC 
    AATACCAGAT GAAACTGCAG AAGTGCAACG AGAGGCGTCT CGCTCTCATC 
    AAATCGAGCC TCGACATAGT TGTTGCTATA GGGCTGCTTC AACTGGCTCC 
    CAAGAAAGTG ACTCCGCGTG TGACAGGGGC GTTTGGATTT GCTAGCTCAC 
    TCATTGCTTG CTATCAGTTG CTCCCAGCCC CAGCCAAATC CAAGTGATCC 
    ACCTGAAGGG GTGTCAGTGG GCAGTTCCAA TGTTGCAACC AGTAAGAAAT 
    AAAAGTGGAG CTGCTTGATT GACTCATGTG GACTTGAAAA TCCTTTGTGG 
    GTTATGGTTA ATATGATGAT CTAGTGGATT GCTGCAGCTG TAATTTTAAG 
    GTGCAGTACT TGTGACAAAA AATAAGAAAC TTAGCATGGG AAAAATGTTG 
    CATTGTTTGC CAATGGTTTA GTGTTGGGAC TAGCTAATAA GAACATTGCC 
    ATTATATCAA CATCTGTTTG TGTGCCTTGT TCGAGACTGA TGAGTGGTTA 
    AATATGCTGT GCTTGCTTCC

    Gene models with high sequence identity

    1. AT1G01820.1 [+] show detail - peroxin 11c
      E-value: 6e-91; Score: 331.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam PEX11 1.1e-47
    Coil coiled-coil 0
    HMMPanther Peroxisomal biogenesis factor 11 7.2e-11

    See the detailed result >

    AT1G01820.1

    Model type
    Protein coding
    Short Description
    peroxin 11c
    Curator Summary
    member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.
    Computational Description
    peroxin 11c (PEX11C); CONTAINS InterPro DOMAIN/s: Peroxisomal biogenesis factor 11 (InterPro:IPR008733); BEST Arabidopsis thaliana protein match is: peroxin 11D (TAIR:AT2G45740.3); Has 289 Blast hits to 289 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 41; Plants - 179; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR