K15330

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15330

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15330

Determination of introduced cDNA(s)

  • J033024P08 - Rice Full-length cDNAs - Original: J033024P08

    full reading [+] show sequence

    Nucleotide sequence: J033024P08 - full reading 
    GGGCCCATCA GTCGAGTCGA TCGAACAGCA CAGCAAGTGA GCAGTGACAA 
    TGGCGTCTCT GGCCGTCGTG GTGGTGGTGG TGGCGGTGGT GTGCGCCGCC 
    GGTGTGGCGG CGGCGGGCAA GTTCGACGAC GTGGTGGAGC CGAGCTGGGC 
    CAACGACCAC GTCGTGTACG AGGGCGACCT CCTCAAGCTC CGCCTCGACA 
    GCTCGTCCGG CGGCGGGTTC GCGTCGAAGA GCAAGTTCCT GTACGGCAAG 
    GCGACCGCCG ACCTGAAGCT CGTGGCGGGG GATTCCGCCG GAGTTGTCAC 
    TGCTTTCTAT CTGTCGTCCG GCGGGGACAA GCACAACGAG TTCGACTTCG 
    AGTTCCTGGG CAACGTCACC GGCGAGCCGT ACCTGGTGCA GACCAACCTG 
    TACATCGACG GCGTCGGCAA CCGGGAGCAG CGCATCGACC TGTGGTTCGA 
    CCCCACCGCC GACTTCCACA CCTACGCCGT GCTCTGGAAC CCCAGCCAGG 
    TCGTCTTCCT CGTCGACGAC ACCCCCATCC GCGTCTACGA GAACAAGAAC 
    GCCACCGCCG CCGTCAAGGG CCACCACCGC CACGCCGCCG CCGCCAATGG 
    CACCAGCAAC GCCACATCGG CGGCGGCGTC CGTGCCGCCG TTCCCGTCGC 
    CGCAGCCGAT GTCGGTGTAC AGCTCCATCT GGAACGCGGA CGACTGGGCG 
    ACGCAGGGCG GGCGGGTGAA GACGGACTGG TCGCACGCGC CGTTCGTGGC 
    CACGTTCCGC GACGTCCGCG TCGAGGGTTG CGCGTGGGCG GCGAACGCCA 
    CGGACTCGGA CGCCGGCGAG GTGGCGCGGT GCACGGGGAG CTCGTGGGGC 
    AAGGAGGGGA GGTACTGGTG GAAGGAGAAG GACATGGAGG AGCTCACCGT 
    GCACCAGAAC CACCAGCTCG TGTGGGCGCG CGCGCACCAC CTCGTCTACG 
    ACTACTGCGT CGACACCGAC CGCTTCCCCG TCCAGCCGCC GGAGTGCGCC 
    GGACGGTGAC CGTCGATCTC GTCGCCGGTT AGGATGGATC GATGGATGGA 
    ACTGCTGGTT TCTTTCTTGG TTAGCAAATC AAATGGCAGG TAGTTTATCT 
    CAGATGAACT TAGGTGATGG TAGTTCATCG TAATTCTGTG TCTCTGTGGG 
    GGTGTATCTG TAAAAAATTG TTACTCGGCT TCCACTGCTG TTCTGCTGC

    Gene models with high sequence identity

    1. AT4G03210.1 [+] show detail - xyloglucan endotransglucosylase/hydrolase 9
      E-value: 6e-84; Score: 308.00

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Beta-glucanase 1.1e-05
    FPrintScan Beta-glucanase 1.1e-05
    FPrintScan Beta-glucanase 1.1e-05
    HMMPfam Glycoside hydrolase, family 16 3.9e-52
    HMMPfam Xyloglucan endo-transglycosylase, C-terminal 9.9e-16
    HMMPIR Xyloglucan endotransglucosylase/hydrolase 3.6e-185
    superfamily Concanavalin A-like lectin/glucanase 3.2e-92
    Gene3D Concanavalin A-like lectin/glucanase, subgroup 2.1e-94

    See the detailed result >

    AT4G03210.1

    Model type
    Protein coding
    Short Description
    xyloglucan endotransglucosylase/hydrolase 9
    Curator Summary
    encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.
    Computational Description
    xyloglucan endotransglucosylase/hydrolase 9 (XTH9); FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity; INVOLVED IN: carbohydrate metabolic process, cellular glucan metabolic process; LOCATED IN: endomembrane system, apoplast, cell wall; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Beta-glucanase (InterPro:IPR008264), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 5 (TAIR:AT5G13870.1); Has 2067 Blast hits to 2047 proteins in 283 species: Archae - 0; Bacteria - 225; Metazoa - 0; Fungi - 377; Plants - 1377; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR