K15339

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15339

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15339

Determination of introduced cDNA(s)

  • J023029N24 - Rice Full-length cDNAs - Original: J023029N24

    full reading [+] show sequence

    Nucleotide sequence: J023029N24 - full reading 
    GACTACAAAT TTATCTTTTC TCGAACGAAA AAAAAAAGCG ATAAAAACCA 
    TCTCATCGAG GAAGAAAGCA ACCCACGATA ACCCTCTTCT TCTTCTACCC 
    ATCTCGCCGT CGCCGCCGCC GCCGCCGCCG CCGCCGTCGA ATCGATCGAA 
    GCCCAGCAGC GAGCGATGGG GCTGGACTAC TACAAGGTGC TCGGCGTGGG 
    CCGCGGCGCC ACCGACGAGG AGCTCAAGAG ATCCTACGAC GTGCTCAGCG 
    ACAAGAACCG CTCGCCGCAC GCCGACGACT CCCTCTTCAA GCAAGGCCGG 
    CGCGGCGCCG CCGCCGACCA CCTCCTCCTC CTCCTCCCAC GGCGGCGGAG 
    GAGGCTTCCG CTTCAGCCCG AGGAGCGCCG AGGAGATCTT CTCGGAGATG 
    TTCGGGGGCG CATTCGGCGG CGCGGGGCCA CGCGCCCCCG GCGCCGGGTT 
    CCCGGGGTTC GGTGGGTCCC CCCGGGCAGG GGAGACGTCG GCGACGAAAG 
    CTCCGGCGAT CGAGCGGCAG CTGGCTTGCA GCCTTGAGGA CCTCTACAGG 
    GGCGCCACCA AGAAGATGAA GATCTCTAGG GATGTCCTCG ACGCCACTGG 
    GAAACCGACA AATCTGGAGG AGATCCTGAC AATCGATATC AAGCCTGGAT 
    GGAAGAAGGG TACAAAGGTA ACCTTTCCCA AGAAAGGCAA TGAGAAGCCT 
    AACATCATAC CATCAGACCT AGTGTTTATA ATAGAAGAGC GGTCGCACGC 
    TAGATTCAAG CGAGACAAGG ATGATCTTAT TTACACGCAT AGGATCTCGC 
    TCGTGGAGGC TTTGACCGGT TGCACAGTCC AACTGACAAC TCTGGATGGG 
    CGGAATTTAA CCGTTCCAGT GAAGTCCGTC ATCAATCCTA CTTCTGAAGA 
    GGTTGTGAAG GGCGAAGGGA TGCCAATCAC AAAGGAACCG TCTAAGAAAG 
    GGGATCTGAA GATCAGGTTT CAGATCAAGT TCCCCACCAA TCTAACGTCT 
    GACCAAAAGT CAGGGATCCA GCAACTTTTG CCTAAGCCTT AACTGGTAGT 
    ACAATATTGT GAACCTGTAT TTAGTCGTTT GTTTTAGCAG TTGGGAATAC 
    ATTGAGAGGG TTTGATCACA GTTGCTGAAT GTACAATCAC TGCTTCGGTG 
    CAAGTATTGA AGAACATGTT TGCATTGGTA TTTCCAACAT TACTCCG

    Gene models with high sequence identity

    1. AT3G08910.1 [+] show detail - DNAJ heat shock family protein
      E-value: 1e-69; Score: 260.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2.3e-24
    Gene3D no description 1.2e-25
    HMMPanther HSP40-RELATED 5.8e-103
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 5.8e-103
    HMMPanther DNAJ HOMOLOG SUBFAMILY B MEMBER 4, 5 9.6e-07
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 9.6e-07
    superfamily HSP40/DnaJ peptide-binding 1.7e-23
    superfamily HSP40/DnaJ peptide-binding 6.1e-15
    HMMPfam Heat shock protein DnaJ, N-terminal 7.8e-05
    HMMPfam Chaperone DnaJ, C-terminal 2.2e-30

    See the detailed result >

    AT3G08910.1

    Model type
    Protein coding
    Short Description
    DNAJ heat shock family protein
    Computational Description
    DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT5G01390.1); Has 28100 Blast hits to 27785 proteins in 3479 species: Archae - 185; Bacteria - 10426; Metazoa - 4606; Fungi - 2650; Plants - 2881; Viruses - 19; Other Eukaryotes - 7333 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR