K15533

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15533

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15533

Determination of introduced cDNA(s)

  • J013127L22 - Rice Full-length cDNAs - Original: J013127L22

    full reading [+] show sequence

    Nucleotide sequence: J013127L22 - full reading 
    GTCTCCCCCC ATTGCCGCCG CCGCCTGCGA CGGCCGCGAG CTCATCCCGA 
    GACGACGTCT CTAGCTAGCA TCGAGCGTTC TTTCTCTCCT CGGGCTCTCG 
    TTGTTGAGAT AAGGCAAATC AAGAGAGCAA AATTTTGGTG GTACATGTGG 
    TGATTCTATG TCGACAAGGC GTCATCTTGC AGTATTTACC ACTGCAAGCC 
    TCCCATGGAT GACAGGAACG GCCATCAACC CGTTGTTCCG GGCGGCCTAT 
    CTTGCAAAGG ATGGGGATAG GGAGGTCACC TTGGTAATCC CCTGGCTTTC 
    TCTGAGGGAC CAAGAATTGG TTTACCCGAA TAAGATTGTG TTCGGTTCGC 
    CTTTGGAGCA TGAGGCCTAT GTTCGTCGCT GGATTGAGGA GAGGATCAGT 
    TTCAGACCTT CCTTCAGCAT CAAATTCTAC CCTGCGAAGT TCTCTAAAGA 
    ACTGAGAAGT ATTCTACCTG TTGGAGATAT CACAGAATGT ATTCCAGATG 
    AAGTGGCTGA TGTTGCTGTT CTGGAAGAAC CTGAACATCT CAATTGGTAC 
    CACCATGGGC GCAAATGGAA AAATAAGTTC AGGCGAGTGA TAGGTGTGGT 
    TCACACAAAT TATATAGCAT ATGTGAAAAG AGAAAAGAAT GGACAAGCGA 
    TTGCCTGTTT CATGAAGTAC ATGAACACCT GGGTTACCCG GATTTATTGC 
    CACAAGATTA TCAGATTGTC AGGTGCCACC CAAGATCTTC CCAGATCTGT 
    TGTGTGCAAT GTCCATGGCG TGAATCCAAA ATTTCTTGAG GTAGGTAAAC 
    TAAAGTTGAA GCAGCTGCGG AATGGGGAAA TAGCCTTCAC AAAAGGGGCA 
    TACTATATTG GGAAGATGGT GTGGAGTAAA GGATACAGGG AACTTCTTGA 
    CCTGCTGTCC AAATATCAGA GCAAGTTGGT GGGTTTGGAA GTAGATTTAT 
    ATGGTAGCGG AGAAGATTCC GACGAAGTTC GAAAATCTGC AGAACTTCTG 
    AGTTTGGCCG TGAAGGTTCA CCCAGGACGT GATCATGCAG ATCCCCTGTT 
    CCATGACTAT AAAGTATTCA TCAACCCTAG CACAACAGAT GTGGTCTGTA 
    CAACAACTGC CGAGGCCCTT GCAATGGGAA AGATTGTCAT ATGTGCCAAT 
    CACCCTTCAA ACGAGTTCTT CAAGCAGTTC CCTAATTGCC GCACCTATGA 
    CAGTGGCGAG GAATTTGTAC TAACGCTGGA TGCTCTAGCA GAGCAGCCTG 
    CTCCACTGAC TGACATGCAG AGTCATGACC TATCTTGGGA GGCCGCGACC 
    GAGAGATTCA TGGAAGCCGC GGAGCTGAAC CTTCCTATCT CAGCAGAGCC 
    AAGAATCCAT CAAACATCCA AGGTCTCTCT CCCTGCTTTT ATGAGGACTC 
    GTAAACTGAA ACAGAGCTTG GAGGATGCAT CAGTTTACCT GCATCAAGCA 
    CTCTCAGGAC TTGAAGTCAC CCGTCGCGCC TTCGGTGCTG TTCCGAAGAC 
    GCTGCAACCT GATGAGCAGC TGTGCAACGA TCTAGGTTTG GCTCCCGCCA 
    AGAAAAAGAG GTTGAAATTG AAGCTGATGA CCTGATGATG TAACTTCTCT 
    TGAGCCCCTG ATTGCATCGT GTCATTTCCT TTTCTGCACA TTATATCCGA 
    GGAGTATGTA TGAATCCTAA TGGAGGATCA GTGCATTTTC CATTAGTATG 
    TTTACTTAGT TCAGGATGTA AATTACACTA CAAATGTAAT TGGACTATTG 
    GAGACTTTGG AGTACTAGTA CTACTAACCT AGTGGCTTTA TTGAAAATTT 
    AAAACTGTGA TGTGATTCTG CC

    Gene models with high sequence identity

    1. AT4G00550.1 [+] show detail - digalactosyl diacylglycerol deficient 2
      E-value: 0; Score: 634.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily UDP-Glycosyltransferase/glycogen phosphorylas 1.9e-11
    HMMPanther GLYCOSYLTRANSFERASE 4.8e-06
    HMMPfam Glycosyl transferase, group 1 4.5e-08

    See the detailed result >

    AT4G00550.1

    Model type
    Protein coding
    Short Description
    digalactosyl diacylglycerol deficient 2
    Curator Summary
    encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane.
    Computational Description
    digalactosyl diacylglycerol deficient 2 (DGD2); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT3G11670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR