K15541

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15541

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Original: K15541

Determination of introduced cDNA(s)

  • J013163I06 - Rice Full-length cDNAs - Original: J013163I06

    full reading [+] show sequence

    Nucleotide sequence: J013163I06 - full reading
    TGGCCGTACA CCATTTCGTT CCGACGCGAG TAATTCCTCC CCACGGGCGG 
    CGACTAGGGC GGCTAGGGTT CGTCGGGCGC CGCCGTGCCG GAGATCGCCT
    CTCGCCGCCG ACACCCGGAT CTCCGCCGCC GCCGGTCGCC CCAGGTTATC
    CCGCTCCCGC AGTCACCATC CCGTCTTCTC CGCCAGTCGC CTCACGCCCG
    GCCTGGACGC CCCGGAATCC ATTGTCGGTC TCGCCCCGCC GACTGCCGTT
    GACGCCACTG GCTGAAGGTG TGAATATGTC GGACAGTGCG TTGAAAGATC
    TGAATCTAGC TCAGTCAGCA GAGCTGGAGA AAACCAAGGA CAGTTCTGCC
    AAGTCTTGCA TCACCAAGCC TGTCTTGAAT GGCAACAAAT GCAACAATAC
    GGAAGAAAAT GCTCCACCTG TACTCCCTGA TGCTGTGACT AATGGGTGTG
    AAGCTGGAAA TGCAGATGTT GAGTATATTG ATTCTGAGAG TCTGACAGAT
    CTTGAAGATG CTGGTGCAAC CCTTAGTACT TTAGTTGCAA GGTTGGATTC
    AAAAGACTGG GTTATGACAT GTGAAGCTCT AAATAATGTT CGTCAGTTGG
    CAATATTTCA CAAGGATAGA TTGCAGGAAC TTCTAGAGCC TCTAGTTCCT
    CTTATTGTGA AATCTGTCAA GAATCCAAGG AGTGCTGTCT GTAAAACCGC
    ACTCATGACC TGCGCTGATA TTTTCAAGGC ATACGGTGAC CTAATGGTTG
    ACTCAATTGA TCCACTGTTA GTGCAGCTAT TTCTGAAATC TTCACAAGAT
    AAGCGTTTTG TCTGTGAAGC TGCTGAGGCA GCCCTCATAT CGATGACAAG
    CTGGATCGCC CCTTCTGCTC TGTTACCAAA AATGCAACCT TACCTTAAGA
    ACAGGAATCC ACGAATTCGA GCAAAAGCAT CAATGTGCTT CAGCAAGAGC
    GTCCCACGCT TGGGTGTGGA GGGAATTAAA GAATATGGAA TGGATAAGCT
    TGTTCAGATC GCAGCAACTC AGCTTAGTGA CCAGCTTCCT GAATCCAGGG
    AGGCTGCTCG CAAGCTGGCT TTGGAGCTAC AAGCATTCTA TGAGAAATCC
    CAAGCTTCGA GTTCTGGTGA AGTTGACGAC GCACCTGCTA CCTCACCTGA
    TGCTGATGCT GATGCTGGTG CTGAATCATG GGAAGCTTTC TGCCAATCAA
    AGCTTTCCCC ATTAAGTGCA CAGGCAATCC TTCGTGTCAC CTCTACGACG
    AAAGAGGGTG TGGCTGTGGG TGTCACCTCT ACCCCTCCGA AAGAAGGCGT
    CACTGTTGGT TGCTAGCATC AGGAGGTAGT AGATGCAATG AGGTTGTGGT
    TTTTCCATCC GATTCACCTT TTGCTGTACA TGGTTATGGT TGTTCTTTCT
    CTACATCCAA TCTGGGATTC GTTCGTTAAG CATCGGTTCG AGAGTTGAGG
    TGTGACCTGT GGGTGTTAAT ATTGGTGCGA GATATACCTG TTATAGTTGA
    CTGTATGATC TTCCTTTTCT CCCACTGCTT GGTATTGATT GGTCAGGCGA
    ATTGTAGAAT TTCTTCCACT ATTCAATATT ACTACACAGT AATTTTTCCA
    TCTCGTGGCC TTGTGTTTAT TTGCTGGTGT TCACTATTTC GTGTTTTTGA
    ATTCTAACTT CTTCCATTAT TCAATATTAT CGAATCAATT CTCATC

    Gene models with high sequence identity

    1. AT5G14790.1 [+] show detail - ARM repeat superfamily protein
      E-value: 4e-92; Score: 335.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Armadillo-type fold 4.1e-18
    HMMPfam CLASP_N 4e-08
    HMMPanther CLASP 1.4e-44

    See the detailed result >

    AT5G14790.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G01450.1); Has 322 Blast hits to 322 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 157; Fungi - 10; Plants - 125; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR