K15604

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K15604

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K15604

Determination of introduced cDNA(s)

  • J033127E15 - Rice Full-length cDNAs - Original: J033127E15

    full reading [+] show sequence

    Nucleotide sequence: J033127E15 - full reading 
    GGCTGAAACA ATAGAGGAGC ATCCATGGGG AACATCCTCC GGTGCTTCAA 
    GGGAGACGAC GATGGCGGTG ATCACTACCC CTACTACAAG CCAACCTCCA 
    GACCACACTA CCAGCCTCCT CACTACCATG GTCAACCTGC AGCCCCCCCA 
    GCTCCACCCC AGCAGCAGCC TCTCGGCCCC CATGGCGTCA CGCCGTCCAC 
    CGTCGGCGTC GCCGCCCTGG CGCACGACCT CCTCAACTTC GAATCCACAT 
    CCATGGTTCC TGATGGCCTC AGTCAGCACG TTGTATCATC CAGGAAAGCA 
    CAGGTTAAAT GGGCATTCTT GAATTTTACA ACTTTCCGAT CCCATCACTC 
    CCCTCAGCAT CGTCAAACTA CCAACCATCC TCGCTACCAG AGGGCGTGCA 
    GTTTGTGCTA AACACTTTGC CGGTTTATGA CAAGTGCATT GGAGATGGTG 
    ATGGATTTAC TGCATATGTT TCCACAACAG ATCCGAGGGA ATCTGCAAAT 
    GTGCCATTGG AAGTGCATGA GTTGGTGATA GCAAGAACTC AAGCACGCAA 
    ATGTAGGGAT TACCAGAGTG CTGATGCTCT TCTAAGCAGC CTTGATGAAG 
    CTGGATACAA GATAATATCT TGTTCAGATG ATGAGGTCCT CGCAAGGAAA 
    TACAGAATAA GAATGAGGGG AATTGATGCA CCGGAGCTTA AGATGCCATA 
    TGGGAGGGAA TCACGGAATG CATTGGTGAA ACTAATTGGT GGGAAGAGCG 
    TTAAAATTTA TGTCTATGAT CTGGACCAGT TTGGGCGCTA CGTTGGTGAT 
    ATCTATTGCA ATAATTTGTT CATTCAGGAG CAAATGCTGA AGAATGGCCA 
    TGCATGGCAC TTCAAGACTT ATGATAAACG CCCAGAGTTT GCAAGATGGG 
    AGAGAGAGGC AAAAGCTGCA AACCGAGGGC TTTGGGCGTC AGGGAATCCT 
    GAGAAACCAT GGGATTGGAG AAGAGACCAA CGCAACGCAA GACAGGACGC 
    CATTCAGGTG TACTGAAAGT TGAGTCTCCA GCACTCATTT GGCCACAAAT 
    GTGCATATAT GTGTAATTGG GTAACGTTGT TGTTGAGTAG CTTTGCTTGC 
    AATGAATGTG TCAGAAACCA AAAGCCAAAA TGTATGTGTG GTTTATGTTG 
    TACGAAAGAG ATTATATATC CAGGAGTCAG CTGTGCCGTG TGATGTGGAG 
    GTGAAATGTG GTCAATGCAA GTGAGCTTTG TTC

    Gene models with high sequence identity

    1. AT2G40410.2 [+] show detail - Staphylococcal nuclease homologue
      E-value: 1e-78; Score: 60.50

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Staphylococcal nuclease (SNase-like), OB-fold 8.3e-27
    HMMSmart Staphylococcal nuclease (SNase-like) 1.20000117458134e-22
    Gene3D Staphylococcal nuclease (SNase-like) 3.00000067992862e-25
    ProfileScan Staphylococcal nuclease (SNase-like) 0
    HMMPfam Staphylococcal nuclease (SNase-like) 5.90000000000001e-19

    See the detailed result >

    AT2G40410.2

    Model type
    Protein coding
    Short Description
    Staphylococcal nuclease homologue
    Computational Description
    Staphylococcal nuclease homologue; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nuclease activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071); BEST Arabidopsis thaliana protein match is: Ca-2+ dependent nuclease (TAIR:AT3G56170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR