K16043

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16043

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16043

Determination of introduced cDNA(s)

  • J013150O18 - Rice Full-length cDNAs - Original: J013150O18

    full reading [+] show sequence

    Nucleotide sequence: J013150O18 - full reading 
    GGTGCTGCCT CGCCCGCCTC CGAGCAGTTG GGGAAGAGAA CCGAAGCACA 
    AACCCTAGCG GCGGCGCAGC TCAGCCGGGG TTTGCGGAGG AAGGGGAGGG 
    GCACCGCCCG CGATGCTCGC GGCGTCGGCT CGGCGGGTGG CGGCCGCCGC 
    CGCCGCGTCG TCCTCCCATT CCAGGCTCGC CAACCAGCTC GCCCACGCGC 
    TGAATCCGCA GAGGTGGATC CATGACCGGA ACAAGAAGGC GATGGAGTTG 
    GTGGCCAAGG GGTGGAGCGC CCTGCAGGAG GTTGATCGCG TCATCGACTA 
    CGCCGACCGC AACGACAAGC GCCTGATCCC ACTTCTCAGG GGTGCAAAGG 
    AAAATTTTGA GCTGGCTCTG GAGATCGACA ATATGAACAC TCATGCGAGA 
    TTATGGCTTG CCAAGATGCA TTTCAAGTAT CATGTTCCTG GAGCTTGTAA 
    GGCCATTGGT GCTGCTCTGT TGGTTGAAGC TGCAAACATG GGTGATCCAG 
    ATGCACAGTA TGAACTTGGA TGCCATTTGA GAATTGAGAA TGACTACGTT 
    CACTCTGACC AACAGGCTTT TTATTACATT GAGAAAGCTG TTGACCAGTT 
    GCACCCTGGT GCTTTGTATC TTCTAGGTGC TGTATATTTA ACTGGAGACT 
    GTGTTAAGAG GGATATAGCT TCAGCAATGT GGTGTTTCCA CAGAGCATCA 
    GAAAAGGGAC ACTCTGGAGC TGCAATTGCA TATGGATCAC TTCTATTAAA 
    AGGTGCTGAA GTGCCTGAGG TTATTACCAG GTTCAACTCA GGTAAGAGTC 
    CATCAACTGG AAAGATGCGA AAAAGGCCCA TACAGCAGGA TCCAGTGAAG 
    CTAGCAAAGG AGCAGTTTCA AATTGCAGCT GAAGCTGGAT GTGATCTCGG 
    TTTGCGATGG CTGAAGAGGC TTGGGGATTA TGAAAAGCAG CAAGAACAAC 
    CAAAGCAAAT CCAGCAATGA CCACCTTCGA AATGATTTGC TTCACTTCGG 
    CATTGCTCTA TGTTGACATG CGTTTGTCAT ACACACTATA CAGGTAGAAC 
    GTCAGATTCT CAACTGTAAT CATGTAATTG AATCCAAGCA CTATGTAAAT 
    TTTGATATCT GGCCCAACTC CTTGAAAAGG TAGACTTGAG TTGATCCCCT 
    TTCTCTACAA AGGATTTTTA TCGTACCAGT CCTTATAGAG TTCGTTACTT 
    TGTTTTTCC

    Gene models with high sequence identity

    1. AT2G25570.3 [+] show detail - binding
      E-value: 3e-102; Score: 369.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily HCP-like 8.6e-15
    HMMPanther SEL-1-LIKE PROTEIN, SEL-1L 4e-11
    HMMPanther SEL-1-LIKE PROTEIN 4e-11
    HMMPfam Sel1-like 0.012
    HMMPfam Sel1-like 3.6e-05
    HMMPfam Sel1-like 50
    Gene3D Tetratricopeptide-like helical 3.9e-24
    HMMSmart Sel1-like 9.9
    HMMSmart Sel1-like 1e-06

    See the detailed result >

    AT2G25570.3

    Model type
    Protein coding
    Short Description
    binding
    Computational Description
    binding; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Sel1-like (InterPro:IPR006597); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR