K16123

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16123

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16123

Determination of introduced cDNA(s)

  • J013099L17 - Rice Full-length cDNAs - Original: J013099L17

    full reading [+] show sequence

    Nucleotide sequence: J013099L17 - full reading 
    GCGTTAGTCA CTCCCCGCGA GCTAAGCTCT CCTCCCCATC ACTCCGATGG 
    CGCTGTCCGC GGCGGCGCCG GCGAACTCCT CCTGCTTCCA CCCGCGCGCC 
    GCCGCCGCCA GCGCGCCCTC ATCTCTCAGC GTGGGCACCA AGGTCTTCGT 
    CGGGTTGAAG GCCCAGACCA AGCTAGGCTC GTCGGAGTCG TCGTGCCCGA 
    ATGTCACCGC CGGGTTCTAC ACCGCCGTCA ACCGGAGGAT CTCTCTGGGA 
    TTATCAAACA AGAGGGCTAC CAGGGCGCGC ATTTCAATGA TGCCTGTTGG 
    TACACCACGG GTGCCTTACA GAACACCTGG TGAAGGAACT TGGCAATGGC 
    TTGATATATG GAATGCTCTA TATCGCGAAC GAATTATCTT CATTGGGGAC 
    AGTATAGATG AAGAGTTTAG TAACCAAGTA TTGGCGAGCA TGTTGTATCT 
    TGACAGCGTT GATAACACTA AAAAGATTCT TCTATACATT AATGGTCCAG 
    GAGGAGATCT TACACCATGC ATGGCATTAT ATGATACAAT GCTAAGCCTA 
    AAAAGTCCTA TTGGTACTCA TTGCCTGGGC TTTGCATTCA ACTTGGCAGG 
    ATTTATTCTT GCAGCTGGTG AAAAGGGTTC ACGTACGGGT ATGCCTCTTT 
    GCCGGATTTC ACTTCAGTCA CCTGCTGGAG CAGCTCGAGG GCAGGCTGAT 
    GATATAGAAA ATGAAGCAAA TGAACTTATT AGGATCAAGA ACTATCTTTA 
    CAGCAAGTTG TCAGAGCACA CAGGTCATCC TGTTGATAAG ATTCATGAAG 
    ATCTATCTAG GGTGAAGCGC TTCGATGCTG AAGGAGCTTT GGAATATGGG 
    ATTATTGACC GTATTATTAG GCCTTCTCGC ATCAAGAAAG AGGGATCCAC 
    TGCTCAAAAG AAGGATCTAC GTAATCTGGG ACTTGGCTAG TAGATGCTAT 
    TGTATCAGTT ATACGTGTTA GATTGTATTG TTCTCCCCTC ATTACTCCTG 
    CTTTGAAATC CTACTGCTTT ATTTCATCAA CAGGAGTTCA TGTGGAGATA 
    TGAGATTTGT TTTGCTGTCT CCATTGGTAT TGGACTTAAA AGAGAGAATA 
    ATGTTGTAGC AGTCATAAGA GAAATACGGT ACTCTAGTTG CCATTCTGGT 
    GATCTCATTT TGTCAAACAT ATCGAGAGAC GCGTCATACA TTTTGTGATA 
    TCAGGCGAGA ATGTTCTTGT TAAATAATGT GTTCGTTGCC TGG

    Gene models with high sequence identity

    1. AT1G12410.1 [+] show detail - CLP protease proteolytic subunit 2
      E-value: 3e-91; Score: 332.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP CLPP_MF_00444 31.034
    superfamily ClpP/crotonase 4.8e-40
    HMMPfam Peptidase S14, ClpP 1.8e-56
    Gene3D no description 4.3e-52
    FPrintScan Peptidase S14, ClpP 1.9e-28
    FPrintScan Peptidase S14, ClpP 1.9e-28
    FPrintScan Peptidase S14, ClpP 1.9e-28
    FPrintScan Peptidase S14, ClpP 1.9e-28
    FPrintScan Peptidase S14, ClpP 1.9e-28
    HMMPanther Peptidase S14, ClpP 4.8e-55

    See the detailed result >

    AT1G12410.1

    Model type
    Protein coding
    Short Description
    CLP protease proteolytic subunit 2
    Curator Summary
    Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001).
    Computational Description
    CLP protease proteolytic subunit 2 (CLP2); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: chloroplast organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase S14, ClpP (InterPro:IPR001907); BEST Arabidopsis thaliana protein match is: plastid-encoded CLP P (TAIR:ATCG00670.1); Has 13082 Blast hits to 13064 proteins in 2999 species: Archae - 2; Bacteria - 8275; Metazoa - 145; Fungi - 81; Plants - 1076; Viruses - 67; Other Eukaryotes - 3436 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR