K16140

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16140

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16140

Determination of introduced cDNA(s)

  • J013000M06 - Rice Full-length cDNAs - Original: J013000M06

    full reading [+] show sequence

    Nucleotide sequence: J013000M06 - full reading 
    TGACCTCGAC CCTGACCGAC CTTCTCACCG CCGCGCCTCC GCCTCCGCCT 
    CCGCCTCAAG CCGCCGCCCG CCGCCGCCAG GAGCGGCCTC TCCATGGCGG 
    CAGCGCCGTA CCACCAGCCG ACCAGCCTGG AGGAGGTCAG GACGCTCTGG 
    ATCGGCGACC TCCAGTACTG GGCCGACGAG AACTACCTCT ACAACTGCTT 
    CGCCCACACC GGCGAGTTAC AATCTGTAAA AATAATACGT AACAAGCTAA 
    CAAGCCTTCC AGAAGGTTAT GGATTCATAG AGTTCATTTC TCATGAAGTT 
    GCCGAGAAAG TTCTACAGAC TTACAATGGC ACACAAATGC CTGGAACTGA 
    GCATACATTC AGATTGAACT GGGCCTCTTT CAGCTCTGGT GAGAGGCGTC 
    CTGATGCAGG ACCTGATCAT TCGATTTTTG TGGGAGACTT GGCGCCTGAT 
    GTCACAGATT ACTTGCTACA GGAGACATTC CGTGTGAGCT ATCCTTCTGT 
    CAAAGGGGCT AAGGTTGTCA CGGATCCAAA TACTGGGAGG TCCAAAGGGT 
    ATGGATTTGT AAAGTTTGCA GATGAAAATG AAAAGAATCG TGCAATGACA 
    GAAATGAATG GTATGTATTG CTCAACAAGA CCTATGCGGA TAAGTGCTGC 
    AATACCTAAA AAAACCACTG GATCTCAGCT TCAGTATGGA GCTGCTAAAG 
    CCATGTATCC AGCAGCAGGT TATGCAGTTC CGCAAGTCCA ACCAGTTCTA 
    CCAGATAGTG ATCCGACAAA CACCACTATA TTTATAGGTA ACTTGGATCA 
    GAATGTGACA GAAGATGAAC TCAGGCAGAT CTGTGTCCAA TTTGGGGAGC 
    TTATATATGT AAAAATTCCA GCCAATAAAG CTTGTGGATT TGTACAATAT 
    GCATCTCGGG CATCAGCTGA AGAGGCAGTA CAACGTCTTC ATGGCACAAC 
    GATCGGCCAA CAAGTAGTCA GGCTTTCATG GGGCAGGAGT CCTGCGAGCA 
    AGCAGGATCA ATCAGCTGTC TGGAGTCAAC AAGCTGATCC TAATCAATGG 
    GCAAGTGCTT ATTATGGCTA TGGATATGAT GCATATGGAT ATGCCCAGGA 
    CCCATCATAT GCATACAATT CTTATGCAGG ATATACCCAG TACCCCCAGC 
    AGGTTGAGGG AGCGACCGAT ATGGCATCAG CAGCTGGAAG CCATGCCCCA 
    GGAATGGAAA AGGAGGAGGT GTATGATCCA ATGAACTTAC CTGATGTTGA 
    CAAGTTGAAT GCGTCGTACA TCGCTGTTCA TGGTAGAGCC ATGCTTGGGC 
    GATCCCTGTG GTTGAGAACT TCATCATTGC CTCAGTCAGC TTGAGCGCCT 
    ATTTATCACT CCTCGTTGCC TTTTTTACTG AAGACTGCAA TGCCAGTAGA 
    GCCAGTTGGT AGTTTGCAAA AACGGAGAAA CTGTGACAGG CTGACTGACA 
    GCTTAATGTA TGTTGATTTG TCATCACATG TATGATTAGG GAACCCCTTT 
    TGCTGAGCCT CTTCTAAGTT AACAGATTAC TGCCAATGAT GCGGCTACTT 
    TATGATGCC

    Gene models with high sequence identity

    1. AT5G19350.2 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 5e-143; Score: 504.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RNA-binding domain, RBD 3.1e-23
    superfamily RNA-binding domain, RBD 1.8e-20
    superfamily RNA-binding domain, RBD 4.2e-19
    Gene3D Nucleotide-binding, alpha-beta plait 1.7e-16
    Gene3D Nucleotide-binding, alpha-beta plait 1e-20
    Gene3D Nucleotide-binding, alpha-beta plait 7.3e-19
    HMMPanther NUCLEAR ACID BINDING PROTEIN 3.1e-177
    HMMPanther RNA-BINDING PROTEIN 3.1e-177
    ProfileScan RNA recognition motif, RNP-1 14.488
    ProfileScan RNA recognition motif, RNP-1 16.807
    ProfileScan RNA recognition motif, RNP-1 15.937
    HMMSmart RNA recognition motif, RNP-1 3.5e-12
    HMMSmart RNA recognition motif, RNP-1 1.6e-18
    HMMSmart RNA recognition motif, RNP-1 1.7e-20
    HMMPfam RNA recognition motif, RNP-1 2.4e-12
    HMMPfam RNA recognition motif, RNP-1 2.5e-16
    HMMPfam RNA recognition motif, RNP-1 1.6e-16

    See the detailed result >

    AT5G19350.2

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding protein 45A (TAIR:AT5G54900.1); Has 29846 Blast hits to 17541 proteins in 840 species: Archae - 12; Bacteria - 2412; Metazoa - 15092; Fungi - 3490; Plants - 6065; Viruses - 0; Other Eukaryotes - 2775 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR