K16239

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16239

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16239

Determination of introduced cDNA(s)

  • J033033E17 - Rice Full-length cDNAs - Original: J033033E17

    full reading [+] show sequence

    Nucleotide sequence: J033033E17 - full reading 
    GATTCACTAA TTGGAACTTG GTGTTGGGAG TCCCCGTCGA CTCGCACTCG 
    ACAGTCGATC GCCAACAAGC CCAAACCCGG AGAGAGCCGG AGGAGATCCG 
    TCGTCTCCCG CATCCTCACC GGCCGCCGGC GATGGAGAAG GGCAAGGGCC 
    TCGCCCGCCG CTGGGCGGTG GAGCTCCACG ACGCCTCCTC CTCCTCCTCC 
    TCCCACTCCT CCATCCCCGA CCCGCCCGGC TTCACCAGAT CCGCCCCCGA 
    CGCGGACGAC GCCGCCGGCG CGCGGCAGCG GAAGGATTCC GAGACCGCGT 
    GGAAGGCGCA GAAAGCGTGG GAGGTGGCGC AGGCGCCGTT CAAGAACCTG 
    ATGATGATGG GTTTCATGAT GTGGATGGCC GGGAGCACCG TCCACCTGTT 
    TAGCATAGGT ATCACGTTCT CCGCTCTGTG GCAGCCCATC AGCGCCCTCC 
    GCTCTGTTGG CAAAGTTTTT GAACCATTCA AGGACCCAAG GGTGGATACT 
    CTAGCACCTA AGTTGGTCTT TATTGCTCTC AACTTGGCAG CTATGGGTTT 
    AGGTGTATGG AAGCTCAATA CGTTGGGTCT TCTTCCAACA AATGCATCAG 
    ATTGGGTGTT TTCACTGGCT CCTGCTCGGG AGGTTGAATA TGCTGGTGGA 
    GGGATCCCCT TGCACTGAAA CCTTTATGTG CTTCAGTTAG TACTTATTAA 
    AGTTTTACCA CTTGGAAGAT GGTGTCTGTA CTAAGCGAAA AATTACCCTG 
    CAGATGGGAC AAGTCTGGTT TTTGTGAGGA TCATATTTCA GCACCTGTAC 
    TAAACTTGCA CTATATCTTG AGACAAGTAA CTTACAATTT CCTTGACCCC 
    TTTTGTTTAC ACTGGTTATT TATACAGAGT CAGTTGATTC TTAGT

    Gene models with high sequence identity

    1. AT5G10780.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85...
      E-value: 6e-61; Score: 231.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SUBFAMILY NOT NAMED 4.7e-94
    HMMPanther Protein of unknown function DUF1077 4.7e-94
    HMMPfam Protein of unknown function DUF1077 1.4e-39

    See the detailed result >

    AT5G10780.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR