K16247

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16247

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16247

Determination of introduced cDNA(s)

  • J023149C16 - Rice Full-length cDNAs - Original: J023149C16

    full reading [+] show sequence

    Nucleotide sequence: J023149C16 - full reading 
    GATTCCCAAC CCGCGCGCGC CCCCTCCTCC CCGTCCTCCT CCTCTTCCTC 
    CTCCTCCCTG GATTCCTACC TCTCGTTTCC CCGAGCAGAC GCTCCCCTAT 
    CCCGCTGCGA AGGAGAGGAG GCGGTGGCGG AGGCGGAGGT GGAGATCGAC 
    CTAGCTAGCT AGCTCACGAT GTCGTGGCTC CGCAACGCGG TGCACCGCGC 
    GGTGGAGGCG AGCGGCGGGC CCCTCCTCAC CCGCACCGTC CGCTCCTCCC 
    TCGGCACCGT CGTCCACCAC GCCGGCCAGG CCGTCGCGGG CGGCGCCAGG 
    CTCATCAACG ACCGCATCGG GAGCCGGAGC TACAAGAGCA TGAGGCTGAC 
    GGCGAAGAGG CTGGAGGACG CGGCGCTGTC CTACAGAGGG GAGGACCGGG 
    TGCAGCTGCT GCGCCGGTGG CTCGTCATGC TCAGGGAGAC CCAGCGCGCG 
    GCCGCGGCGG AGAAGGAGGC GAAGCGCGCG GGCCATCCTG ATCAACACCT 
    GCCCGTGTTG GATCTGTATA TGGATTACGA GACCGGGGCC GAGCCGATGA 
    ACTTTATCCA TGTCTTCCTC TACAGCCAAG CGCTCGAATG CCTCGTTTTA 
    TCCATGATTA TGGAATTCCC TACTGAAGAA GAAGCCTCGC TTCTCTCAGA 
    AGTTTTTGGA TTGTGTCTTC CTGGAGGAAA GGATGTCCAC AATGCAATAC 
    TTAGTAGCAT AAAGGAGTTG GCAAAGTTAT TTTCAACTTA CCATGATGAA 
    GTGTTGGCAA AACGTGCTGA GCTGCTTCAA TTTGCTCAAT GTGCAATCTC 
    AGGGTTAAAA ATAAATCCTG GAATTTCAAG ATTAGATGAT GAAATCTTGC 
    AGCTACAACA ACGGATAAAT GGAATGGACG CTCTTCGATC TAATTCGACC 
    AGTAGGCGTA GCAAAGCATC ACAAACAGTC GCGGAGGGTT TCAGAACTGC 
    AGTTAATGAG ATTCGCTTAT GCTCTAGAAT GGAAGAACTT GTATTGATGA 
    AGAAATCAAT GCATCATGGC AACTCATTCG AGACTTATTT TGAGAAGGTT 
    AATAAATTGA AGGTTTTGTC AGAATCACTT GCAAATTCAG CTGCAAAAGC 
    AGAAAGGAGA ATCATGGAAA ATAGGCTACA AAAGGAGGAA TCTCTTATTT 
    TCCGAGTTAC CAAAACAAAT GAAGTTAGTG TAACTGAAAA GGAAATACTG 
    GCTGAGATCT CTGGGCTTCA GAAGCAAAAG GATCTACTTG GGGATGAACT 
    AAAGAAAGTA AATAATATAC TGAATGCGGC TGTAATGAAG CTTAAAAAAA 
    CTAGAGAGGA GAGAGACCAA TTCGATGAAG CCAGCAATCA GATTGTGCTG 
    CACTTGAAAG CAAAGGAGGA AGAACTGTCA AGATCTATTG CTTCCTGCAA 
    AGTTGAGTCA AGCACTGTCG GTGCATGGAT CATATTTTTA GAAGATACAT 
    GGAAGTTGCA GTCTTTGTAT GAAGAACTAA GGAAAAAACA AGCCAATGAT 
    GAACTGGACA AGTGTGCGAC TTGCTTTGCA AAATTGATTA ATCATCATCT 
    TTATGCACGA GTGGAAGAGC TGAGCACTTG CATTGATAGT ATAAAGACCT 
    TTGTTGATAA CTTGAAAATA TTTGATAACA GATCGGTATC AGCGGAAGAT 
    GGAAACAATG GTTCGTCCGA GCAATCAAAT CCACGTAAAT ACCTTGAGGA 
    AGAATATCTG GAAGCTGAGA AAAAGGTGGT AGCAGCATTC AGTTTGGTTG 
    ATAACATCAG AGCAATATAT TTGTCCAATC AAGATTATCA AGCCAGGAGA 
    GATGATCCTG ACGTGAAAAA ACTATTTGCC AACATTGACA AGCTGCGGGT 
    CGAGTTTGAA TCGGTTCCAC GGCCACTGCT GCAAATCGAG ATCAAAGAAA 
    GAGAAGAGAG AGCAAAGCAA TCTCGTTCCT TGCAGGCTGC TCGCTCATCA 
    AGACAAGCAG GACACGAGTC CCCAATACCT GCTCAACTCA GGACACGCCT 
    GCCATCAGAG TCCGACTCAG AACTGGCGAA ATCTGACCCA GAGTACAGGG 
    AGTATTCGGC TGATGACATA AGTGGGTGGG AGTTTGATGA CCTTTAAGAT 
    GATGGGGCAA GGCTTTCAGT GAAATCTATA TAGGAGGAGC ATCAAATCTG 
    GGCTCAAGTC CTGAATAGTT CGTGTAGGGA TAGAATCACT GGCCCAAAAA 
    TTTGGAGAAC GTGTTGTAGT GGAGTGCTGT GTACAAAACT GTACATTGTA 
    GCCTTCGTTG CCGTAAAGAT TTCTTTGCTT CATCTTGCG

    Gene models with high sequence identity

    1. AT5G13560.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); ...
      E-value: 5e-128; Score: 455.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT5G13560.1

    Model type
    Protein coding
    Computational Description
    unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G37370.1); Has 12055 Blast hits to 8846 proteins in 811 species: Archae - 217; Bacteria - 1046; Metazoa - 6104; Fungi - 1115; Plants - 528; Viruses - 14; Other Eukaryotes - 3031 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR