K16307

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16307

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16307

Determination of introduced cDNA(s)

  • J013160C22 - Rice Full-length cDNAs - Original: J013160C22

    full reading [+] show sequence

    Nucleotide sequence: J013160C22 - full reading
    GGCCTCCCTC CTGCTCAGCT ACTACTACTA GTAGCTATGC TGCCATGGAA 
    TCGAGCTGCT CCGTACAGCT AATTCTTCAC CATCAACCTA CTCCATCCTC
    TCTGCTCACT CTGAATTCTC AAGGTATAGT TCTCATCAGG TAGATGGCCA
    TGGAAGCAGC AGATGAGGAG AGGGCGCCTC TGCTTCAACC TCAACCTCAA
    CCTTCACGGG GGATGCAGAT TCAGAGTATA CAGGTGATGG ATCGGTGGAC
    GTCAACAACC AGCCTGCTCT CAAGCGCAGC ACGGGGAATT GGAGAGCATG
    CTTCATGATC CTAGGTGTCG AATTCAGTGA GAATTTGGCT TACTATGGGA
    TCTCCAAGAA CCTGGTGACC TACCTCACCA AGATTCTCCA CGAGAGCAAA
    GTGAACGCCG CGAGGAATTC CTCTGCTTGG TCGGGCGCCT GCTACCTCAC
    GCCACTCTTT GGAGCTTTCT TGGCTGACAC ATATTGGGGG AAATACCGGA
    CTGTTCTTAC TTTTCTCCCG ATTTACATCC TGGGATTGCT TACTCTAATG
    GCGTCGACGT CACTCCCATC CAGCATGACG TCCTCCGACG CCGGTCACCA
    GCTTCACAGC GTCGCCGTCT ACCTCGGGCT GTACCTCGTC GCCTTCGGGA
    ACGGCGGCGT GAAGCCGTGC ACGTCGGCGT TCGGGGCGGA CCAGTTCGAC
    GGCGGTGACG CGGCGAGCTG AGGAGGAAGG GGTCCTTCTT CAACTGGTAC
    ACCTTCATGA TCAACAGCGG GTCGCTCCTG GCGTCCACGG TGCTGGTCTG
    GCTGCAGGAC AATGTGGGCT GGGGGATCAG CTTCGTGATC GTCGTCGTGG
    TCATGGCCTT CTTCCTCGCC GTCTTCTTCG CCGGCTCGAG GGTTTACAGG
    TACAGGCCGG TCAGGGTGAG CCGATGGCGG CAGTGCACAG TGACACAGGT
    GGAGGAGGTG AAGATGCTGG TGCGGATGTG CCCCATCTGG GCATGCCTGG
    TGCTCTTCTT CTCGGTGAGC AGCCAGATGT CGTCGACGCT GGTGGAGCAA
    GGCACGGCCA TGGACAACCG CGTGGGCCCC TTCACCATCC CTCCGGCCTC
    GCTCGCCACC TTCCACTCCA TCGGCGTCCT CCTCTGGATC CCCGTCTACG
    ACGTCGCGCT GGTGCCCCTG GCGCGCCGCG CCACCGGCAA GCCCAAGGGG
    ATCACGCAGC TGCAGCGCAT CGGCGTCGGC CTCGCCGTGG CCGCGCTCAT
    CATGGCCTAC TCGGCGCTGG TCGAGGAGCG GCGGCTGGCG GCGGCGCGCG
    CCGGCGCCGC CAGGACGAGC ATCCTGTGGC AGGTGCCGGC GCAGCTGATG
    CACGGCATGG CGGTGGTGTT CACCAGCATC GGCAAGTCGG AGTTCTTCTA
    CGACCAGGCG CCGCGCTCCA TGAGGAGCAT GTGCACCGCG CTCGGCCAGC
    TCGCCATCGC CGCCGGGAAC TACCTCAGCG CGTTCCTCCT CGCCGTCGTC
    GCCTCCGCCA CCACGCGCGG CGGCGACCCC GGATGGATCC CCGACGACCT
    CAACAAGGGA CACCTCGACT ACTTCTTCTG GCTCATGGCT GCTCTCTTGC
    TCCTCGACCT GCTCTTATTT GTCTTCTGCG CCATGCGATA CAAAGGGAGC
    ACTGCTGCTT CTTGATCGAC CCACCCAAAA ATGTCACTCT ATGTATGGCA
    TTTGTAGGAC TGTACAAAAA TTGAATTCGA AAATATTTTA TGATTCACTA
    ATATTACATA GATGAACCCC TTTAACTGCA CGCCAAGTGT GTAAATGCAA
    CCTCAGACAC AAAGCATATT TAATTTACAA CCTCTTGTAA CTACTAACTA
    TTGATACAAA ATAGAGCTCT TTTTTCACC

    Gene models with high sequence identity

    1. AT2G02020.2 [+] show detail - Major facilitator superfamily protein
      E-value: 7e-79; Score: 146.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oligopeptide transporter 5.9e-16
    HMMPfam Oligopeptide transporter 1.3e-29
    HMMPfam Oligopeptide transporter 3.9e-17
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 1.6e-85
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 1.6e-85
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 3.5e-161
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 3.5e-161
    superfamily Major facilitator superfamily, general substrate transporter 9.7e-16
    superfamily Major facilitator superfamily, general substrate transporter 2.5e-10

    See the detailed result >

    AT2G02020.2

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: membrane; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: LP.06 six leaves visible; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G62200.1).
    Link
    InterPro Scan - TAIR