K16325

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16325

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16325

Determination of introduced cDNA(s)

  • J013156I04 - Rice Full-length cDNAs - Original: J013156I04

    full reading [+] show sequence

    Nucleotide sequence: J013156I04 - full reading 
    GTCGTCGCTG CATTCCGGTT GAGTGAGTTG GTGATTATCT GTAGGGGGTG 
    AAAATGGCGC AGGCGGTGGT GCCGGCGATG CAGTGCCAGG TCGGGGCCGT 
    GCGGGCGAGG CCGGCGGCGG CTGCGGCGGC GGCGGGGGGG AGGGTGTGGG 
    GAGTCAGGAG GACCGGGCGC GGCACGTCGG GGTTCAGGGT GATGGCCGTG 
    AGCACGGAGA CCACCGGGGT GGTGACGCGG ATGGAGCAGC TGCTCAACAT 
    GGACACCACC CCCTTCACCG ACAAGATCAT CGCCGAGTAC ATCTGGGTTG 
    GAGGAACTGG AATTGACCTC AGAAGCAAAT CAAGGACAAT GTCAAAACCA 
    GTGGAGGACC CCTCGGAGCT ACCAAAATGG AACTACGATG GATCAAGCAC 
    AGGGCAAGCT CCAGGAGAAG ATAGTGAAGT CATCTTATAC CCACAGGCTA 
    TATTCAAGGA CCCATTTCGA GGTGGCAACA ACATATTGGT TATGTGTGAT 
    ACCTACACAC CAGCTGGGGA ACCCATCCCT ACTAACAAAC GTAACAGGGC 
    TGCACAAGTA TTCAGTGATC CAAAGGTTGT CAGCCAAGTG CCATGGTTTG 
    GAATAGAACA GGAGTACACT TTGCTCCAGA GAGACGTAAA CTGGCCTCTT 
    GGCTGGCCCG TTGGAGGCTA CCCTGGGCCC CAGGGTCCAT ACTACTGCGC 
    TGTAGGATCG GACAAATCGT TTGGCCGTGA CATATCAGAT GCTCACTACA 
    AGGCATGTCT TTATGCTGGA ATTAACATTA GTGGAACAAA TGGAGAGGTC 
    ATGCCTGGTC AGTGGGAGTA CCAGGTTGGA CCTAGTGTCG GTATTGAAGC 
    TGGAGACCAC ATATGGATTT CAAGATATAT TCTTGAGAGA ATAACGGAGC 
    AGGCTGGTGT AGTGCTTACC CTTGACCCCA AACCAATTCA GGGAGACTGG 
    AATGGAGCTG GGTGCCACAC AAACTACAGC ACCAAGAGTA TGCGTGAAGA 
    TGGAGGATTT GAGGTGATCA AGAAGGCAAT CCTAAACCTA TCACTTCGCC 
    ATGACTTGCA TATAAGTGCA TATGGTGAAG GAAATGAAAG GAGGTTGACA 
    GGTTTACACG AGACAGCTAG CATTGACAAT TTCTCATGGG GTGTGGCAAA 
    CCGTGGATGC TCTATTCGGG TGGGGCGAGA CACCGAGGCG AAGGGAAAAG 
    GCTACTTGGA AGACCGTCGC CCGGCATCAA ACATGGACCC GTACGTCGTG 
    ACAGCGCTAT TGGCTGAAAC CACAATTCTT TGGGAGCCAA CCCTCGAAGC 
    GGAGGTTCTT GCTGCTAAGA AGTTGGCCCT GAAGGTATGA AGAACTTGGA 
    CGATGAATCG GGGCAAATAA ATCCCAGCAA AATTTGTTTG CTGCCCACCA 
    GTCTTGATCT TGTATTTCTT CTGTCTGGGG ATTGGTCTGT ACAAATCTGC 
    AGTTTCTAGA AAACCACGCC ACCTTCCATT CGCCAGTTAA CATTTTGGTT 
    GAACACCACA CTTGATCTGG GTCTGTATTT TGAGTCCATT TGTGAGTGAC 
    AGAACGGATG ATGAAACACA TCAGGGACAC TTTTAAGTTT CTTCAGTCCT 
    GCGTCCTTCC CTCGAAATAA AAATGTTTCC TTGTTTTTT

    Gene models with high sequence identity

    1. AT5G35630.3 [+] show detail - glutamine synthetase 2
      E-value: 0; Score: 647.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glutamine synthetase, catalytic domain 2.3e-62
    HMMPfam Glutamine synthetase, beta-Grasp 3.3e-19
    superfamily Glutamine synthetase/guanido kinase 7.3e-66
    superfamily Glutamine synthetase, beta-Grasp 7.4e-19
    HMMPanther GLUTAMINE SYNTHETASE (GLUTAMATE--AMMONIA LIGA 1.9e-263
    HMMPanther GLUTAMINE SYNTHETASE 1.9e-263
    Gene3D Glutamine synthetase/guanido kinase, catalytic domain 1.4e-55
    PatternScan Glutamine synthetase, beta-Grasp 0
    PatternScan Glutamine synthetase, catalytic domain 0

    See the detailed result >

    AT5G35630.3

    Model type
    Protein coding
    Short Description
    glutamine synthetase 2
    Curator Summary
    chloroplastic glutamine synthetase
    Computational Description
    glutamine synthetase 2 (GS2); FUNCTIONS IN: glutamate-ammonia ligase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glutamine synthetase, catalytic domain (InterPro:IPR008146), Glutamine synthetase, beta-Grasp (InterPro:IPR008147), Glutamine synthetase/guanido kinase, catalytic domain (InterPro:IPR014746); BEST Arabidopsis thaliana protein match is: glutamine synthase clone F11 (TAIR:AT1G66200.1); Has 8236 Blast hits to 8234 proteins in 2572 species: Archae - 144; Bacteria - 3324; Metazoa - 415; Fungi - 259; Plants - 1746; Viruses - 3; Other Eukaryotes - 2345 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR