K16414

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16414

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16414

Determination of introduced cDNA(s)

  • J033129N23 - Rice Full-length cDNAs - Original: J033129N23

    full reading [+] show sequence

    Nucleotide sequence: J033129N23 - full reading 
    GGCGTCCATC CGTGGAAGGG AACGGAAAGG GGGAAGAAGA GCTGCAGCGA 
    GCGACGAGGG CATCGCCGCC TCCGCCGCCG CCGCGCGCGA CGGTTTATCC 
    CGTCCCCGAT CCGATCGTCG CCGGGGCTCC TCCTCCTCCA CCCTCGCCGC 
    GGGCAATATT TGGAACCCCC CAGGGAAGTA TCTCTCACCG CCGATCGCCT 
    CTCATGCCGT GCTGAGTGGA GCGCCTACCG AATCCCTACC CCCACCCGCC 
    GCCGCCGCAG CAGCTCGTGC CGTATCCTGT TTACAGCGGT TTGTGGGTGA 
    TGGCTTCCAA CGCCGACCAG CACGCGGCGG CGAACGGTGG TGGGGGGACG 
    ACGCCGGCTG CGACCGGTAG CCCCCCTGCC GGGAAGAAGG CGGCGGCCGC 
    TGCAGCGTGG AAGAGGCCGG GGAACGGGGC GGCGGTGCCG GTCGTGGTGG 
    CGCCTGGGAG CCCCATCATG GACGCCGACT CATGGCCGGC GCTGCCCGGG 
    CTGGCGTCTC CGCCGCCGAC GACGCTGACG CCGACGCCGA TGCCGCCCAA 
    GGCATCGCCC AAGGTGGCTC CTCTACCGCC ACCCGCTGAG GCGGTGATCC 
    CACCGATCTC CTTGGGGAAT TCCGGCGCTC CGGATGCTAA TCCTGATCAC 
    GAAGCACCGG TGCGGAATCC GCCGGCTAGG CGTGCCCTGG TGATGCCTGT 
    GGGGGATGGG CTGGACAAGC GTGCCCCTGG CTCAGAGCCA TCCCCAGTCT 
    ACACCCCTAA TGCCAGGAGC AATGGAGGCG GTGATCACCA CCAGAATGGT 
    CGATATGGTT CCCATCCCCA TAGCCGAGGT AGTGGCTATG GTGGTGGGGG 
    GAACAGGAGG GGCAATGGTG GAGGTGGAGG TGGAGGTCGC CGTGGACAGG 
    AGCACCATGG TGGTTTTGAT GGGCAACGCC GTGGCGGTGG CCGCAGGGAC 
    GGCCATGGGC CTGGACACCA GCAGCGCGGC CACCATCCAT CTTACATAAG 
    GGCTCCTCTG GCTGTTGTGA CTGCGGCGCC TCCTCCACCA CCACCATTTG 
    TTAACCCTGC TACTCCACAA ACACCACCTT ATGGAGCTCC CATAGGCTTC 
    CCTGAGATAG CACCTCATGT CTACTATTTT ACGTCTCCCC TGGAAGGTGT 
    TCAAGCACTG CCTTTTGTGC CTCACCCAGC AAGCCCTCCA GCTATGTTAA 
    TTCCTCAATT TGATCCTCTT CGAGCGGAGC TGCTGAAGCA GATAGAGTAC 
    TACTTTAGTG ATGACAATTT GTGCAAAGAC ATATTCTTGA GGCGGCATAT 
    GGATGACCAG GGTTGGGTGC CATTACCCCT GATTGCAGGA TTTAATCAGG 
    TAAAAAAGCT GACTAATAAC GTGCAGTTTA TCTTGGAAAC AGTTCTGCAA 
    TCTACCGTGG TTGAAGTACA GGGTGACAAA TTGCGGAAGC GTGAAAGATG 
    GGAGATCTGG TTGCTTCCAA AACAAGGTTA TTCTGCTGGA AATTCTTCTG 
    GTTCGCTGTC CCCTGTGACA TCCAACATTG ATTCACTGGC ATCTCAGTTT 
    CAATCTGTTG GACTTGAGGG GGCAGGCTAC CATGCAAGTC AAGGAATGCC 
    CGGTGAAGCT CTCCTTACTA GGTCAGCAAC TTCAGTTAGT CTAGGTTATC 
    AGGCACCCCC CTTTGGAGGG TTATACAGCA ACGGGAGTGG ACCACTTTTT 
    GGGCAGAAGT CTGCAAGAAG TTTACTCCGG AGCGATACCT TTTGAGGTTT 
    TACACAAGAA AGATTACAAC GGCATGCCGA GTTTTCTCTG GTTACGGCAC 
    GCGTACCTCA TCTACTGGGG TGAGGAGTGA GGACTAAAAT CCAGTTGATT 
    TGGAAGAAAA CAACCAAAAA AAGGAAATAA AACATACAAA AAAGAGAGAT 
    AGAAATACCC AAAAAAATAT AAAAATATAA AAACCAAAAA AATCGAAAAA 
    CTTAAAAACA AGAGGAAAAA ACATAGTAGG TAGTATTATG TGCAGGACTT 
    ATGTATTTTG TGGTTGTGCT CTTGCTGGGA CGTGAGTACG TGACATTACC 
    TGTTAAGTAC TCGTTTGATT GTTGCTCTTT TGCAGACTGA GTTGTTATGG 
    ATGTTGTCAG TCGGAAGCTG TTAAAGACGA GACAAACTTA TTTCAAAAAA 
    CTGATGACAT TATTATCAGT TGTGC

    Gene models with high sequence identity

    1. AT5G66100.1 [+] show detail - winged-helix DNA-binding transcription factor family protein
      E-value: 5e-27; Score: 120.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RNA-binding protein Lupus La 2.6e-23
    superfamily "Winged helix" DNA-binding domain 8.2e-32
    HMMSmart RNA-binding protein Lupus La 8.4e-31
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 1.2e-24
    ProfileScan RNA-binding protein Lupus La 27.332
    HMMPanther LUPUS LA PROTEIN-RELATED 6.5e-39

    See the detailed result >

    AT5G66100.1

    Model type
    Protein coding
    Short Description
    winged-helix DNA-binding transcription factor family protein
    Computational Description
    winged-helix DNA-binding transcription factor family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT4G35890.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR