K16531

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16531

Determination of introduced cDNA(s)

J013039M01 - Rice Full-length cDNAs - Original: J013039M01

full reading [+] show sequence

GACACACAAC GCTCGCACTC CTCTCCTCTC ATCTGACATA TCTCCTCCCG 
TCCTTTCGAA GCCTCTCGAA TCGCATCGCC GAGCCGGATG GCGGTCACCG 
CCGACGTGAA GCTCGAGGGC CTCCGCGCCG CCACCGACAA GCTCGACCAG 
ATCAGCGAGA ACGAGAAGTC CGGGTTCATC AGCCTCGTTT CGCGCTACCT 
CAGCGGCGAG GCGGAGCAGA TCGAGTGGAG TAAGATCCAG ACCCCGACCG 
ACGAGGTGGT GGTTCCCTAC GACACGCTCT CGGCTGCTCC CGAAGATCTC 
AACGAGACGA AGAAGCTGCT CGACAAACTC GTCGTGCTCA AGCTCAATGG 
AGGCCTCGGG ACGACCATGG GCTGCACTGG TCCCAAGTCT GTCATTGAAG 
TCCGCAATGG CTTTACGTTT CTAGACCTTA TTGTGATTCA AATTGAGTCC 
CTGAACAAGA AGTATGGATG CAATGTCCCT TTGCTTCTAA TGAACTCATT 
CAACACTCAT GATGACACAC AGAAGATTGT TGAGAAGTAC TCCAACTCCA 
ACATTGAAAT TCACACTTTC AACCAGAGCC AATATCCTCG CATTGTTACT 
GAAGACTTCT TGCCACTTCC AAGCAAGGGG AAGACTGGCA AGGATGGCTG 
GTATCCCCCA GGCCATGGTG ATGTGTTCCC CTCCTTGAAT AACAGTGGAA 
AACTTGATAC CTTGTTGGCA CAGGGCAAGG AGTATGTCTT TGTCGCGAAC 
TCGGACAACT TGGGTGCTAT TGTTGACATC AAGATCTTAA ACCACCTGAT 
CCATAACCAG AACGAGTACT GTATGGAGGT TACTCCTAAA ACATTGGCTG 
ATGTTAAAGG TGGTACCCTC ATCTCTTACG AAGGGAGAGT TCAGCTGTTG 
GAGATTGCTC AAGTCCCTGA TGAGCATGTG AATGAATTCA AGTCAATTGA 
GAAGTTCAAG ATCTTCAATA CCAACAACCT GTGGGTGAAC TTGAAGGCCA 
TCAAGAGGCT GGTAGAAGCT GAAGCACTTA AGATGGAAAT CATTCCTAAC 
CCTAAGGAAG TTGATGGTGT GAAAGTTCTG CAACTCGAAA CTGCAGCTGG 
AGCAGCCATT CGGTTCTTTG AAAAAGCAAT TGGCATTAAT GTTCCCCGCT 
CGAGATTTCT GCCAGTCAAG GCTACATCTG ATTTGTTGCT TGTACAGTCT 
GATTTGTACA CCTTGGTCGA TGGCTTTGTC ATCCGCAACC CAGCCAGAAC 
AAACCCATCA AACCCTTCGA TTGAGCTTGG ACCTGAGTTC AAGAAGGTTG 
CCAATTTCCT GGCCCGGTTT AAGTCAATCC CCAGCATTGT CGAGCTTGAC 
ACCTTGAAGG TCTCTGGTGA TGTCTGGTTC GGCTCTGGAG TTACACTCAA 
GGGTAAGGTG ACCATCACCG CCAAGTCAGG GAAGTTGGAG ATCCCAGATG 
GAGCCGTGCT TGAGAACAAG GACATCAACG GTCCGGAGGA TCTTTGAGGC 
TGCTCACGGA AACCTTCCAG ATATATTTAG CTGAGCGTTT TGTAATTGTC 
GTGTGCATTC GGCAGCCAGG GCTCGATGAT CCCATTACAG AATAATTGTA 
ATCATCTTGG CACATCCGTA CTTCTGTTTT TTGGTGTGCC AAGGGCGTTG 
TATTTCATTT ACTTAAATGA TCTCGTAATA CCATAGTTTT GCATGCACTG 
TAGCTGGGAG CTCGTAGTTT ACTGGTAATT CTATTCAGAG TTTACTACTG

Gene models with high sequence identity

AT5G17310.2 [+] show detail - UDP-glucose pyrophosphorylase 2
E-value: 0; Score: 759.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	UTP--glucose-1-phosphate uridylyltransferase	8e-191
Gene3D	no description	1.3e-62
HMMPanther	UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 2	1.4e-262
HMMPanther	UTP--glucose-1-phosphate uridylyltransferase	1.4e-262
HMMPIR	UTP--glucose-1-phosphate uridylyltransferase, subgroup	3.2e-286
superfamily	Nucleotide-diphospho-sugar transferases	2.4e-126

See the detailed result >

AT5G17310.2

Model type: Protein coding
Short Description: UDP-glucose pyrophosphorylase 2
Computational Description: UDP-glucose pyrophosphorylase 2 (UGP2); FUNCTIONS IN: UTP:glucose-1-phosphate uridylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: response to cadmium ion, callose deposition in cell wall, response to salt stress, metabolic process, pollen development; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase, subgroup (InterPro:IPR016267), UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UDP-GLUCOSE PYROPHOSPHORYLASE 1 (TAIR:AT3G03250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR