K16534

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16534

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16534

Determination of introduced cDNA(s)

  • J013073F17 - Rice Full-length cDNAs - Original: J013073F17

    full reading [+] show sequence

    Nucleotide sequence: J013073F17 - full reading 
    GACTTCTCCA CGCTCTCTCT CTCGCGCGCG CAAATGGCGT CGTCGACCAG 
    CCTCGCCGCG CTGCCCTCGC AGCTCGCCTC CCCCGCCCGC CGCGCCGCCC 
    TCTCCCGGTC CGCTACCGCG CGGCCGCGCC ACCACCACCA CCCCCTCCTC 
    CGCGCACCGC CCAAAGGCTG CAGGCTGGTG GTGACCTGCA ACGCGCAGAC 
    GGCGGTCCCG ACCAGCATTG CGCAGGGCAC GCCCGTCAGG CCGACCAGCA 
    TCCTGGTGGT CGGCGCCACC GGGACGCTGG GACGGCAGGT GGTCAGGCGG 
    GCGCTGGACG AGGGCTACGA CGTGCGCTGC CTCGTCAGGC CCCGCCCGGC 
    GCCGGCCGAT TTCCTCCGCG ACTGGGGCGC CACTGTGGTC AATGCCGATC 
    TCAGCAAGCC AGAGACCATT CCCGCGACGC TTGTTGGTAT TCATACCGTC 
    ATCGATTGTG CTACAGGGCG TCCCGAAGAG CCCATTCGGA CGGTAGATTG 
    GGAAGGAAAG GTTGCTCTAA TACAATGTGC TAAGGCCATG GGAATTCAAA 
    AGTATGTGTT CTACTCTATT CATAACTGTG ACAAGCACCC GGAGGTTCCC 
    TTGATGGAAA TCAAGCATTG TACAGAGAAG TTTATTCAGG ATGCCGGTCT 
    GGATTATCTC ATCATCCGTT TGTGTGGTTT CATGCAGGGC CTAATTGGGC 
    AATATGCTGT GCCCATACTA GAAGAGAAGT CAGTATGGGG AACTGATGCT 
    CCTACCCGGA TTGCTTACAT GGATACCCAG GACGTTGCTC GACTGACGTT 
    TATTGCCATG CGGAATGAGA AGGCTAGCAA GAAGCTCTTA ACTTTTGCCG 
    GACCACGTGC CTGGACAACT CAAGAGGTGA TTACACTGTG TGAGCGGTTG 
    GCTGGCCAAG ATGCCAACGT TACTACTGTC CCTGTTGCAG TGTTGAGATT 
    TACTCGTCAG TTGACACGGT TCTTCCAGTG GACAAATGAT GTGGCTGACA 
    GACTGGCATT CTCAGAGGTC CTCTCCAGTG ACACAATTTT CTCAGTTCCA 
    ATGAATGATA CATACCAGCT TCTTGGGGTA GATTCAAAGG ATATTCTCAC 
    CTTAGAGAAG TATTTGCAAG ATTACTTCAC TAACATTTTA AAAAAATTGA 
    AGGATCTCAA GGCACAGTCC AAGCAAACTG ACATATTCTT TTGACAAGAA 
    GGATATCTAC AAACCTATGG ATATATTTTC TGATGCAGAT CTGTGCTTCA 
    AAACACAGAT GAGTGAATAC AAATTTTCTT GTATATCTGT TGTTGTGGTA 
    TGTGCAAGAA GTGCATGCTA TTAGGTTATG TCTACAGAAT CCCAACTATT 
    GAACTATCAG GTCATGTATA TAGGATCTCA ACTATTCAAC TATCAAAGAC 
    CTGGAGTTTG TGTAGATCAG ACCTAAATTC ATGAATTCAC AGTCAGCTTC 
    TGCTTTTCTA TAATCACGCG TTTTAGCATG ACTAGTGAAC CAGAATGTAT 
    TGTATTATCT TGGGATAGAC TAAAGATGAA TTATTGTTTT TAATCTGTAC 
    TATGACAAAC AATAAAAATT GCATAACAAT TAAAGAAAGA GATGCACATG 
    AAATTTCCTT GGACCTTTGG AGAAGGCCTA CCTGGCTTAC CTGTGAAGAG 
    GAAACAAATG AGGCCATGAC ATCCAGTGAT AAATACAATC TTGCTACTTA 
    ATACCATAAA TTTTGTGTGT TAATGTCCTA GATTTGTGTT GCAACAGATC 
    AATTTCAAAT CCTCAAAGGA GCCATAAGCA GCAAAGCTTT CTAGCCTCAA 
    ATAGTGTACC GCACATTTTA TATTCCAAAT GAATGTTTTG CTTATTACCT 
    GGGGGTGGGG GTGGGGGTGG GGGTTAAAGT TTGATTTCTT TTCCCCTTTA 
    TGATTGGCAC ATATCAGACC AACTCTGGTG TTTACTTCTA TTTTAGACCT 
    TGCGGCTGGA GCTGGCATAT TTCCTATATA GGCCAGATCC ACCTCATAAG 
    GAGTGTATCA GTGTACAAAT CACAATCATT ATGAGTTGTT GAAACAACAC 
    TACTATTTGT AAATCAGATA ACTAAGCTTA ATCTCTATCC CTGAAAAAAA 
    AAATCTGCAC TACCATCCCA GATAGATGCA CCAAAATGTA TTTTCTCATA 
    AGACAAAAAA TATACTTTTG TTACTGAAGC ACGGATATAC TTTTTCTATT 
    GATGTATTTT CATCTGTTCA AATGTCCTGC ATATTTGTTG ACTTCACGTA 
    TATATATGAT ACCATTTTGA TATTAGTGAG ATTGGTGGTT CTGTCATAGT 
    AAATTGGCAA CATGAACTAT GCCAACATTT TGTTTTTTTC ACTAGAAAGG 
    CAATAGTGCA GACATCTCAT GGAATAATGA CATTGTGAAC CTCAGTAGTA 
    TGTGAACATT GAATGCACAA CACAAATTAG ATCAAACTTT TGTCTCTTCA 
    TGTATGAACA TTTCTGTACA CTACATATAC AAATGGGAAG GATCGGCAAA 
    TCCTTTAAAA GGCGGATACC GATCACATGC TATCAAGAAT GACAGAGGAG 
    TATCTATGAG CTAAGAATGT TAAGGAGAGT AACCCTGCTC TGGACCAATC 
    TCCTGAACAC AAGTCCAGCC CCAGCCTCAA GATCTCCGAT GCAGCACTCT 
    AACACCTGCA ACTGTTCCTC ACTGCAAACA ACTGAGTTTT TCTTCAGGAA 
    TGCCTTGGAG ATGATAGACA TTTTTGGTGT TGCGATTTGC TTCGATAAGA 
    GGTCCATTGA TGACTCAAGT ACAGAGGTTG TGATCTCTCT AGCCTTGCTC 
    AAGAGCTTGA CCATCTTGTC ATCCTCCTTG TCTGAGAGAT CCAGTAGCTC 
    AAGGGAGCAT TCCATTTCTC CATCCAACAA CTTCCTTTGC TGGGATGAGC 
    AAATTTGGTT GCTAGGCAGG CACATGATGC CCTCAACAGA GCTGTAGATA 
    TCCTCAAGCC TCTTTAAACC ATCGGAGAGG ATCTCAATGG TCATCGAGGT 
    TGAAGAGATG GATGCCTCTA CGATGTGAAG CTCTTCTTCA ACTTTGGAGT 
    GAGTCCTAGA AGGCAAGCTA ATTGATCTTT GGTGGCAAGC CATATCTGTT 
    GATGTAATTC TTGTTGTGTT GTGGCTGAGG AGATGGGAAG GAGAGTCCAA 
    GCTTTGGTTT GATGTGTTTG GCCTTCTGCC AAGGCCTATT TATACAGAGG 
    AACTGCACGG GACAGCATCG TTTGGTTTAC AGACAAGTAG AATCCCTCCA 
    GTTCATCTCC CAGATGCTGT CTATCAAGGT CTGAGATCTG GTAGCAGCAT 
    ATAGAATCTA TTCTGTCACT CATGTGTAGC TGCATATATT AGTGCACTAC 
    ATATCCTCCC AATGAACTAT CACATTGTCA TGTTCCAACT ATTGGAAGCA 
    AGAATCAGAA GGTTAGTTCA CTCTATTGGT GGATCTTGAC ATTATTGCGT 
    TTTCAAGATG TTACTTTAAG GGAGTGGTAC TGAGTATTGT TGGTGG

    Gene models with high sequence identity

    1. AT4G35250.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 8e-174; Score: 608.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily NAD(P)-binding domain 2.4e-56
    HMMPfam NmrA 4.1e-25
    HMMPfam Protein of unknown function DUF241, plant 4.5e-08
    HMMPanther UNCHARACTERIZED 2e-55
    HMMPanther NITROGEN METABOLIC REGULATION PROTEIN NMR-REL 2e-55
    Gene3D NAD(P)-binding domain 3.3e-51

    See the detailed result >

    AT4G35250.1

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Computational Description
    NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G34460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR