K16540

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16540

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16540

Determination of introduced cDNA(s)

  • J023061G14 - Rice Full-length cDNAs - Original: J023061G14

    full reading [+] show sequence

    Nucleotide sequence: J023061G14 - full reading 
    GGTGAAGCCG CATCAACCAA AACTATCTGT GTTGTTGAGT TCTTGCGCGT 
    GCGTGCGTCA CTAGCCAGAA ACTTGAGTGT TTGTGATAAA CACCTAGAGA 
    GCGAGAGGAG AGATTCCTAA CAGCAGCTCA GCTGGTTGCC GGCGACGCCC 
    ACCTCCCCGA AGGCGGCGGC GCCGAACGTG GACGGGAGCG TGCCGGTGAG 
    GAGGTTGCCC TCGAGGAGGA GGTTGAAGAC GGTGGCGGTG GGCGGGATGG 
    CGCCGCTGAG GCGGTTGCCG TCGAGGCGGA GGAAGGTGAG GTCGGGGAGC 
    GCGCGCGGGC CGAGGAACGA CGGGAAGGGG CCGTACAGCT GGTTGTAGGC 
    GAGGTTGAGA ATCTGCAGCT TGGTCAGGTT GGCGATGGCG GCCGGTACGG 
    GCGCCGAGAT GTTGAGCGCG AAGACCGTGA GCTCGGTGAC GCGGCCGGTG 
    ATGGCGTCGC AGGAGACGCC ATCCCACGAG CAGCACGGTG TGGAGGAGTT 
    CCAGACGGAG AGCGCCGGCG GGTTGCCGAG GGCCGACTTG ACAGCAAGGA 
    GAGCCGCCTT GTCGGACTTG TCGCAGAGGG CGCCGTCCGC CTCGGTTGTT 
    GCTGCCGCCG CAACAAGGAG GACGGCGAGC AGGATTGCCA TGGTGTGGCA 
    GAATGGATTG CTGAGCTCCA TGGACGCCGG CTAGCTGAAT TTGGATGACG 
    GAATTATGTA GGGAAGGAGC TTAGCTATAA ATGGCCATAT GGCCCGTGGC 
    CCGCGGCCCG GCGCAAAGCA CGCGTGTTTG GCCCGGCCCA AGCATGGCCC 
    GGCCCAATTG GAGTCGTGCT CGTGCCGGCC CGGCCCGACA GCCGGGCCGT 
    GCTTGGGCCG CGCCATCGGC ACGCTGGGCC AGCACGGCAC GGCACGAAAC 
    AGGCCGGCAC GGTGGGCCGG CACGGCCCGG CATGCTATAA CGGCAGGCAC 
    GGCCCGACCG AGGCACGCAC ACCGCAGCCC AGCCAGCCGG CCCATCACCT 
    CCCTCGCATA TATAAGCCGC CCCCGCCGCT CCGCTCCTTC GCCTCCTCCG 
    CTCCTCAAAC CCTAACCCTA GCCGCCTCTG TCTCGACCGC TTATCTTTCT 
    CGACCACTCC GTCGCTCCAC CGCCTCCACG CCTCCACTCC ACGGCTCCAC 
    TTCCTCCACG CGGACCAGTG GACCACGCCT CCATCACTCC GCTCCTCGCC 
    GGATCTAGCA CCGACGGTCG CCGGCCTACC GCTGGGGGCA TGAGGGGCTG 
    AGGGCCGTTC TTCTCTCTCT TTTTCTTTCA TCTCCACCTC TCCGACGGCC 
    ACACTATCGA TTTCCTCTTT TTTTTCCACC CTCGTCGTTG CTCCGTGAGC 
    ACTTTGTCAG ATCCACCCCC ATTTCCAGTC TCTGTTCTCG TCTTCTTGTA 
    GATCTGTCGA TCTCTGTCGT CAACGGCAAC TCCGGTGCTC CGGACGCGCA 
    GGTCGCTGAG CGGTGAGCGC CAGCGGTAGC CACCGTTGAG GAACCGTAGT 
    GCCGTCGATG GATGATCCAT CCTCCTGCAA CTTTGAGTTG AGGCTGCTGG 
    GAATGCGGGG TGATGACGAA GATGACTTGG AGGAGGAACG CGTGGAGGTC 
    TTCGGCAACA CTGCCTCGCC TCGGATCGAT GGGTCGCAGC CGGAGACAGA 
    GACGGAGCCG GACGATGACG GTACCGGTGC CGGTGGCAAC GGCGCGCCGT 
    CCGGCTTAAG TGCTAGCAAC AAACGGTCCA GATCTCAGGT ATGGAACGAC 
    TTTGAAGAGC TCTATGAATC CCGAAATGGC AGTCAGGTTC GTGTTCGTGC 
    TAAATGCAAT TACTGCCATA AAATCTTGTT TGCTTGTTCA TCTGGTGGTA 
    CTGGACATTT GATTAGGCAT ATTAAGTCAT GCAAACCTAG AAATGCTGGT 
    GCTCTGTCTC AGTCTATGCT CCGGTTTAAT GCTGATGGTT TTGTTAGTCA 
    ATGGGAATAT AAGCCAGATG TTGCC

    Gene models with high sequence identity

    1. AT5G16590.1 [+] show detail - Leucine-rich repeat protein kinase family protein
      E-value: 1e-15; Score: 82.40

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, BED-type predicted 11.197
    superfamily L domain-like 7.1e-20
    Gene3D no description 1.6e-24
    HMMPfam Zinc finger, BED-type predicted 1.5e-07
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 1.5e-13
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.3e-16
    HMMSmart Zinc finger, BED-type predicted 5.2e-17

    See the detailed result >

    AT5G16590.1

    Model type
    Protein coding
    Short Description
    Leucine-rich repeat protein kinase family protein
    Computational Description
    Leucine-rich repeat protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, response to symbiotic fungus; LOCATED IN: plasma membrane, membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G02880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR