K16611

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16611

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)

Invisible phenotypes

Original: K16611

Determination of introduced cDNA(s)

  • J013002N03 - Rice Full-length cDNAs - Original: J013002N03

    full reading [+] show sequence

    Nucleotide sequence: J013002N03 - full reading 
    GGCAGCGATC TGAAGTGAAA CAGCAAAAAA AATCAAACAA AAAGAAAAAA 
    TATTCCCCAT CTGTGAAATT CGCAAAACCC TAGCGCGGCG GCGATGTCGA 
    ACACGAGGGT GTTCTTCGAC ATGACCGTCG GCGGAGCTCC GGCGGGGCGG 
    ATCGTGATGG AGCTGTACGC GAAGGACGTG CCGCGGACGG CGGAGAACTT 
    CCGCGCGCTC TGCACCGGCG AGAAGGGCGT GGGCAAGAGC GGCAAGCCGC 
    TGCACTACAA GGGGAGCACC TTCCACCGCG TGATCCCGGA GTTCATGTGC 
    CAGGGCGGCG ACTTCACCCG CGGCAACGGC ACGGGAGGGG AGTCGATCTA 
    CGGCGAGAAG TTCGCCGACG AGGTGTTCAA GTTCAAGCAC GACAGCCCCG 
    GCATCCTGTC CATGGCGAAC GCCGGGCCCA ACACTAACGG GTCCCAGTTC 
    TTCATCTGCA CCGTGCCCTG CAGCTGGCTG GACGGGAAGC ACGTCGTGTT 
    CGGCCGCGTC GTCGAGGGCA TGGACGTCGT CAAGGCCATC GAGAAGGTGG 
    GATCCCGCGG CGGGAGCACC GCCAAGCCGG TCGTCATCGC CGACTGCGGC 
    CAGCTCTCCT AGATCTGTGC TGTTCCCCTT CGCCTTTCGC CAGTATCAGT 
    CGTCTTGAGT CGTCGAGTCC CTAAATAAGG AGGAGGTGGT GGTGGTGTTA 
    GTCTTTTTAT GAGTTCGTGT CGTGTTGGTG AGATGAGATC GCCCATGGTT 
    TGGTTGGATT AGGCGGAGTT CTTGGATCGA TTCGGTGGAG TTGGATCTGC 
    GATCCTTCTT GGGGTTGGTT TTAAATCTTA ATTCGTGTCG CTGCTTCTAT 
    GATATCGCTA TCAATCAATG AGAACATTTG GGATC

    Gene models with high sequence identity

    1. AT2G21130.1 [+] show detail - Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
      E-value: 1e-69; Score: 260.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 4.5e-69
    HMMPanther CYCLOPHILIN 6e-122
    superfamily Cyclophilin-like 1.7e-76
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.9e-41
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.9e-41
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.9e-41
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.9e-41
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.9e-41
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.7e-48
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 46.206

    See the detailed result >

    AT2G21130.1

    Model type
    Protein coding
    Short Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: rotamase CYP 1 (TAIR:AT4G38740.1); Has 16606 Blast hits to 16571 proteins in 2692 species: Archae - 108; Bacteria - 6886; Metazoa - 2917; Fungi - 1384; Plants - 1286; Viruses - 4; Other Eukaryotes - 4021 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

  • J023056A05 - Rice Full-length cDNAs - Original: J023056A05

    full reading [+] show sequence

    Nucleotide sequence: J023056A05 - full reading 
    TGGGGCCTTG GCGTAAAAGA AAGAGAAATC TCCATTCTCG TCGTCTCCTC 
    AGCTGCTTGC GCCAAGACGA GTCGCGGCTC AACAGGGGGA GGGGCGGCGA 
    TCTCCATCCA TCCGGCGAGC AGAGCAGGGG AGGGGAGGGG ATCCTGGAAA 
    ATGCTAAACC TTATTAAGAT AAAGGGTCAA AAGAAGGAAG ATGCAGCCAA 
    TGCAAATGGA AAGCCTCCTG CCAAAAAGCA AAGTCCAGGG GAGTTGCGTC 
    TTCACAAAGA TATTGCTGAA CTTAAACTTC CTAAGTCGAC TAGAATTTCT 
    TTTCCTAATG GCAAGGATGA TTTGATGAAC TTTGAAGTTA CTATTCGACC 
    TGATGAGGGA TACTATGTAG GTGGTAAATT TATTTTTACT TTCCAAGTTC 
    CTCCTGCCTA TCCTCATGAA CCACCCAAAG TCAAGTGCAA GACTAAGGTC 
    TATCATCCCA ATATTGACTT GGAGGGAAAT GTCTGCCTTA ACATTCTGCG 
    TGAAGATTGG AAGCCTGTCC TGAATGTCAA CACGATTGTA TATGGCTTGA 
    ATCTTCTTTT CTCACAACCT AATGATGAGG ACCCTCTAAA TCATGAGGCG 
    GCAGCAGTTC TTCGAGACAA CCCAGAAAAG TTTGAGAGAA ATGTCCAGAG 
    GGCAATGGCT GGAGGCTATG TTGGTGAAAC CCACTTCCCT AGATGTATGT 
    AAGGCCTGAA GATGGTGATC GGTACCTGAC TTATCTGCTG CTGCCATTTC 
    TCCTACCAAT GCACTATGGT AAAAGCAGTA TATGTAACCA AGAAGGAACT 
    TCTCTGTTAT GTAACAACAG CAGTTGCTAG AAAGTAAGTT AGTGAGGCAA 
    TTGAACTCAC GTTCATAACC CGCAATCCGA AGACTCTGGG TTAACCTGTT 
    GTGGCAAATG TTCTCTTTTG GCCCTCGCGC GCATCTCAGT CATTCTGATT 
    CATACCAGTT TCTGAGATGC TTTTGTATAA TGCCAGCTAG AGAAAATGCT 
    GAACAGTATG TGTGTGCTGC ACTTACTGCC TGTTATGACT TATGGCTACC 
    AGGAAGTAAG AACAAGTTCA CTAACATTGC TTAATGTAAC ATGCTACCTT 
    GGGTAGTTGT GTTGTTCTTT TTTCCAAGCT CTGTAACTGG AAAAGTCTTC 
    TCCACCTAAA TGTTCTGAAA GGCATTTCAT GGCTATTTTA ACTGC

    Gene models with high sequence identity

    1. AT4G36800.2 [+] show detail - RUB1 conjugating enzyme 1
      E-value: 3e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RUB1 conjugating enzyme Ubc12 2.2e-101
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 2.2e-101
    HMMSmart Ubiquitin-conjugating enzyme, E2 1.2e-38
    superfamily Ubiquitin-conjugating enzyme/RWD-like 5.2e-46
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 6.1e-41
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    ProfileScan Ubiquitin-conjugating enzyme, E2 30.267
    HMMPfam Ubiquitin-conjugating enzyme, E2 3.3e-38

    See the detailed result >

    AT4G36800.2

    Model type
    Protein coding
    Short Description
    RUB1 conjugating enzyme 1
    Curator Summary
    RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1.
    Computational Description
    RUB1 conjugating enzyme 1 (RCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608), RUB1 conjugating enzyme Ubc12 (InterPro:IPR015580); BEST Arabidopsis thaliana protein match is: Ubiquitin-conjugating enzyme family protein (TAIR:AT2G18600.1); Has 8473 Blast hits to 8470 proteins in 386 species: Archae - 0; Bacteria - 0; Metazoa - 3871; Fungi - 1731; Plants - 1533; Viruses - 20; Other Eukaryotes - 1318 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR