K16624

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16624

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16624

Determination of introduced cDNA(s)

  • J023146P18 - Rice Full-length cDNAs - Original: J023146P18

    full reading [+] show sequence

    Nucleotide sequence: J023146P18 - full reading 
    TCGCCGCCGC CTTCTCCATC GTAAACCCTC GTCAGTTTGG AACAATGGCG 
    TTGGCTAATA AGATTGGTAA TCTGCTCAAG AGAGCCACGA GCTCAAGTCC 
    AGCTCTCTAT CAATCAATCA GATGCATGTC ATCCTCAAAG CTTTTTGTTG 
    GAGGCCTTTC GTACGGCACA GATGAGCAGA GCCTCAGAGA TACTTTTGCC 
    AATTATGGTC AAGTTATTGA AGCTAAGATC ATCAATGACC GTGAAACTGG 
    GAGGTCTAGA GGTTTTGGCT TCATAACTTA CGCATCAAGT GAAGAGGCTT 
    CAGCTGCAAT CACAGCCTTG GATGGAAAGG ATCTCGATGG GCGTAACATC 
    AGGGTTAACA CTGCCAATGA GAGAACTGGT GGCTTCCGTA GTGGGGGTGG 
    TGGCTATGGA GGCGGTGGCT ATGGCGGCGG CGGTGGCGGC TATGGTGGTG 
    GTGGCTACAG TGGTGGTGGT GGCTATGGCG GTGGTGGCTA CAGTGGTGGT 
    GGTGGTGGCG GCGGCGGCTA CCAAGGAGGC GGCGGTGGTT ATGGTGGCAA 
    CAATGGAGGG TATGGCAACA GGGGTGGTGG TGGAGGTGGT TATGGAGTTG 
    CAGAAGGATC TGCAGATGCC TTCTCTGGAA TCAACTTAGG TGGTGATGGT 
    AGTTTTGGTG GAAACCCAGC TGGAAGCTTT GGTGATGCTG GAGGTTCCAC 
    TGGCGGTGGT GATTTCTCCG GTGCCGGTGG TGACAGCTTT GGAAGCCGCA 
    AGAACGATGA GCTCATGGAT GACCTCTTCA AGGATGACGA GCCTGACAAC 
    TATGCCAACA AGCAGGGCTA ATTAATCTAC GTCCTTCGAG CCTCAGTTTG 
    CAGTCTCTTA GTGATGAACC GGCTCACCTG AATGGTCATC ACCTGCTCAA 
    GCATCAAATT CCAGAACAAT ACACAATGAC TGGGTTTTCT TTTTCTTCTG 
    TTCTTTTTCA TAGATGTGGT GTAATAACGT AAACATCACT CAAGGTACTA 
    CTTCTAGTTA TGTTATGTTG AGATGGC

    Gene models with high sequence identity

    1. AT5G61030.1 [+] show detail - glycine-rich RNA-binding protein 3
      E-value: 3e-31; Score: 132.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther RNA recognition motif, glycine rich protein 7.9e-47
    HMMPanther RNA-BINDING PROTEIN 7.9e-47
    FPrintScan EGGSHELL 3.9e-09
    FPrintScan EGGSHELL 3.9e-09
    FPrintScan EGGSHELL 3.9e-09
    FPrintScan EGGSHELL 3.9e-09
    superfamily RNA-binding domain, RBD 1.6e-32
    ProfileScan RNA recognition motif, RNP-1 21.907
    ProfileScan L27 8.789
    HMMSmart RNA recognition motif, RNP-1 9.9e-30
    Gene3D Nucleotide-binding, alpha-beta plait 1e-32
    HMMPfam RNA recognition motif, RNP-1 1.4e-24

    See the detailed result >

    AT5G61030.1

    Model type
    Protein coding
    Short Description
    glycine-rich RNA-binding protein 3
    Curator Summary
    encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.
    Computational Description
    glycine-rich RNA-binding protein 3 (GR-RBP3); FUNCTIONS IN: RNA binding, copper ion binding, ATP binding; INVOLVED IN: response to cold; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 5 (TAIR:AT1G74230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR