K16634

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16634

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16634

Determination of introduced cDNA(s)

  • J013075B12 - Rice Full-length cDNAs - Original: J013075B12

    full reading [+] show sequence

    Nucleotide sequence: J013075B12 - full reading 
    GGCTCCACCT CGTCACCTCC GCCTGCTCCC CGCCGCGCGT CAGGCTCGTC 
    GGCCCCACCA CCGGCCGGAG ATCGCCGCTG CGCGCGGCTC CGGCGCCGCC 
    GCCGCCGCGG GCGTACAAGG TGACGATCGA GCACGGCGGC GAGTCGCGGG 
    TGGTGGAGGT GGAGGAGGGC GAGACCATCC TGTCGCGGGC GCTCGACGAG 
    GGCATCGACG TGCCGCACGA CTGCAAGCTC GGCGTGTGCA TGACGTGCCC 
    GGCGCGCCTC GTCGCCGGCG AGGTGGACCA GAGCGACGGC ATGCTCAGCG 
    ACGACGTCGT GGCGCAGGGC TACGCGCTGC TCTGCGCCTC CTACCCGCGC 
    TCCGACTGCA CCATCCGCGT CATCCCCGAG GACGAGCTGC TCAAGGTCCA 
    GCTCGCCACC GCCGACGACT GAGGCACATC GCGCGCCCGC CGCCGCCGCC 
    GTCGCCGGCG TGTGTGTCAT CTCCGGCTAG CTTGTACAAC TTTTTTCCCC 
    TCAAGTGGTA TTTCCCGAGA TATTTGTGAC AATTGCTCCT TTGCCTAGCT 
    AGTTGTTTCA GTTGTGATAA TGTAGTATCT ACTATTTTTG TTTTAAGCAT 
    TATGTAGGAT ACATAGTATT ATTTCTATCT TTTTCATATT CTAAGAGACG 
    AACTACAAAA GGGTAATGTA CAAAAATTTG GGGAGCT

    Gene models with high sequence identity

    1. AT4G14890.1 [+] show detail - 2Fe-2S ferredoxin-like superfamily protein
      E-value: 2e-32; Score: 135.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Ferredoxin 3.6e-28
    HMMTigr Ferredoxin [2Fe-2S], plant 4.8e-26
    HMMPfam Ferredoxin 9e-14
    Gene3D Beta-grasp fold, ferredoxin-type 1.5e-25
    ProfileScan Ferredoxin 12.2

    See the detailed result >

    AT4G14890.1

    Model type
    Protein coding
    Short Description
    2Fe-2S ferredoxin-like superfamily protein
    Computational Description
    2Fe-2S ferredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding, 2 iron, 2 sulfur cluster binding; INVOLVED IN: electron transport chain; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Ferredoxin [2Fe-2S], plant (InterPro:IPR010241), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: ferredoxin 3 (TAIR:AT2G27510.1); Has 5496 Blast hits to 5494 proteins in 1067 species: Archae - 103; Bacteria - 3665; Metazoa - 7; Fungi - 2; Plants - 612; Viruses - 5; Other Eukaryotes - 1102 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR