K16711

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16711

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16711

Determination of introduced cDNA(s)

  • J023039B08 - Rice Full-length cDNAs - Original: J023039B08

    full reading [+] show sequence

    Nucleotide sequence: J023039B08 - full reading 
    TTGGTGAAAA AAATTATTCC CTTCGACCCA ACCTGTTCTT ACGTTCGCCT 
    TCAACTCCGC GATCTCCAGT GGCCAATTAG GCTTGCGTCT CTTCCTCAGA 
    TTTGGCTGCA GAATTTGAAG CGGTCTTCCA CCTCTCAATC CCATCGCCTC 
    CCTCCCCTCC CCTTCCGCCG CTTCATCTGA ATCCCCAAGG ATCTCGTCCA 
    CGCTTCTGGC CCGCGCCTCT TCCCAGTTTT GGTTGCTCGA ATTTCAGCCG 
    AGCTGGTGTT CCGAGCGATC GATTGGAGAG CAAAATTGGA TTTTGATTTG 
    CGAGCTGAGC TGTTTGAGTA AAAGCGAGTG AAAATGATGG AGCAGGATGG 
    AAGGTACTGA GGTTGGGGTG ATTCAGTAAA TTATTTCGTT GGCTGGCAAT 
    GCAGTGCTTC TGCCCTGGGG CGAAGATGAA CAGGATCGAA AAGGCAGCCC 
    GGTCATCGGA GATCAGCAAG CACTCATCTA CGAATGGCGA GATCAAGCAG 
    CACATCAACA ATATTGATAC TGAAGAAGCT GACTTTCCCC TCCAGGAGGG 
    AGGTTCGCTT AAAAGAGGCA AGAGCATTGC TAGGAAAGGT AGAAAACCAA 
    CATGGACACG CTGAAGAAGC ACTACGAGTG TTCAGTGGAA TAAATATGCC 
    TGCATTAATT CCTAAGGTGA AAATGTCTAT CATTAGAAAA GTGGACCTGC 
    AAAAGGCCCA GTTACATTCC AGCTCTCCTT CATTGCCTTT TCATGCTGCT 
    ATTCTGCTAC TGGAGATTAT ATATTTCAAA GCTACAGCAC TTCGCAATCT 
    TGGAAAAATC GAAGAAGCTA CAAAAGAGTG CAGTAGCATA TTGGATGTTG 
    TGGAATCTGC ACTACCTGAG GGTTTGCCAG ACATCTTTGG TGATGACTGC 
    AACCTGAAAC CAACACTATG CAGAGCTGTT GAATTGCTTC CAGAGCTATA 
    TAAATTAGGG GGTTTTCATT TTGAAGCTAT CTCTTCATAC AGGAGGGCTC 
    TTTGGAGTAA CTGGAATCTT GATGAAAAGA CAATTGGTAG GATACAAAAG 
    GAATTTGCGG TTCTTCTCCT ATATAGTGGC TGTGAAACTT GCTCTCCGAA 
    TCTTCTATCT CAGTTGGATG GCTCATTTGT ACCTCGGAAC AATTTGGAAG 
    AAGCCATTCT TCTTTTAATG CTTCTATTGA GGAAGTTCAA TCTTAAGAGG 
    CTCGAGAGGG ACCCAACCGT GATGCATCAT CTGACATTTG CATTGTCCAT 
    GTCAGGGCAG TTAAAACCAC TAGCTATTCA GTTTGAAGAA TTATTACCTG 
    GAGTATTACA CAACAGAGAG TGGTCGTACA ATGTTGCTTT GTGCTACCTA 
    GCAGAAGAAG ATGATCTAAT CGCCCTGAAT CTGCTCAAAA GGATATTGGT 
    GTCTGGAGAA GATTCCAATA ATCTCAAAGA ACTTCTCCTA GTTTCCAAAA 
    TTTGTTGCGA GAACAGTGTA CAAGGTGAAG AAGGTACTTT GTATGCACGC 
    AGAGCCCTAA CTAATCTACA TGGAGGTTGC GATCAAATAG AGGTTACTGC 
    TGACCTTTTG CTTGGCATTT CCCTTTCCAA TCAAGCTAGA TTTGCTACGA 
    CCAACACAAA GAGAGCCTCT CAGCAGCGTG AAGCGTTGGA AGTGCTCAGT 
    ATTTCTGAAA AGAAGATGCA TGGCATAGAT TTTAGGGTAC TATACAATCT 
    CAGCCTTGAA AATGCCAAGC AGAGGAAATT GGATACAGCA GCTCGTTATG 
    CAAAGAAACT TTTGAAATTA GAGGCTGGAT CAGAACTCAA GACTTGGCTC 
    CTTATGGCTC GAATAATGAG TGCCCAAAGA CGGTTTGAAG ACGCTGAGTC 
    CATTGTAAAT GCCGCGCTAG ATCAGACTGG AAAATGGTTT CAAGGAGATT 
    TATTGCAAAT TAAAGCCAAA ATGCAGGCTG CACAGGGTAA ATTTAAGAAA 
    GCAGTTGAAA CATATACCCA GCTTCTTGCT GTCATCCAGC TAAGGACAAA 
    AAGTTTCAAT GCTGGGATTT CTGTGTTAAA GGGCTCTAAG GATGATAGAA 
    GTCTGGAAAT AGAGACGTGG TATGATCTGG TCCTTCTGTA TATAAGAATG 
    TCACAGTGGA GGGATGCAGA ACTTTCCATA TCAAAAATAA AAGCTATCAG 
    CCCATACTCT GCCTTGGCTT TTCATGCTAC AGGAAAGCTA CATGAAGCAA 
    AAGGTTTTCT AAAGGAAGCT CTTCGAGCAT ACTCAACAGC ATTGGACCTT 
    GAACCTAGAC ATGTACCAAG TTTGATATCA ACAGCTATTG TTCTTCGACG 
    GCTTGGCGAG AGACCCTTGC CTGCTGTAAG GTGTTTCCTA ACTGATGCAT 
    TGCAATTAGA CAGAACAAAT CATATTGCGT GGTTGAACCT TGGCTTACTA 
    TACGAAGATG AAGGGGGCAG TTCAGCACTT GAAGCTGCTG AATGTTTTCA 
    GACTGCTGCT CTTCTTGAAG AAACTAACCC AGTAGAACCT TTTAGATGAC 
    ACAGATTGTA CTCAAATTGA ATGTTTTAGG GAGATTGCTA TAGTACAAAG 
    TACTTTCACA ACACAGTTTC TAAACATTTT TTCCCCTTCT GGTGCATTCT 
    TTTTGTGCTT CACCATCCCA ACATTTAGGA GAGGAGAGTG TGTAAAGTGC 
    ATTAATTACA AACACGTACA CGTGTACAAT TGTTACCCCA TATTTTTGAC 
    ATAATATTGA GATTATAGCA TG

    Gene models with high sequence identity

    1. AT4G28600.1 [+] show detail - no pollen germination related 2
      E-value: 6e-161; Score: 565.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily TPR-like 4.4e-27
    superfamily TPR-like 1.4e-05
    HMMSmart Tetratricopeptide repeat 110
    HMMSmart Tetratricopeptide repeat 67
    HMMSmart Tetratricopeptide repeat 310
    HMMSmart Tetratricopeptide repeat 57
    HMMSmart Tetratricopeptide repeat 180
    HMMSmart Tetratricopeptide repeat 7
    HMMSmart Tetratricopeptide repeat 71
    Gene3D Tetratricopeptide-like helical 2.9e-22
    HMMPanther TETRATRICOPEPTIDE REPEAT PROTEIN, TPR 1e-09
    ProfileScan Tetratricopeptide repeat 5.428
    ProfileScan Tetratricopeptide repeat 6.372
    ProfileScan Tetratricopeptide repeat 9.912
    ProfileScan Tetratricopeptide repeat-containing 8.587
    ProfileScan Tetratricopeptide repeat-containing 18.221
    Coil coiled-coil 0
    Coil coiled-coil 0

    See the detailed result >

    AT4G28600.1

    Model type
    Protein coding
    Short Description
    no pollen germination related 2
    Curator Summary
    encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.
    Computational Description
    no pollen germination related 2 (NPGR2); FUNCTIONS IN: calmodulin binding; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G43040.1); Has 2060 Blast hits to 1763 proteins in 357 species: Archae - 278; Bacteria - 547; Metazoa - 329; Fungi - 78; Plants - 247; Viruses - 0; Other Eukaryotes - 581 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR