K16847

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K16847

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K16847

Determination of introduced cDNA(s)

  • J033052F18 - Rice Full-length cDNAs - Original: J033052F18

    full reading [+] show sequence

    Nucleotide sequence: J033052F18 - full reading 
    GAGCAAGAGA AGAACATCCA AGCGAAGAAG GTGGGGAAGA GAAGAAACAA 
    TGGCGGCGCA GCAGCTGCTG CTCCTCCTCC CACTCCCGCT ACCTTCCAGA 
    ACCTTCTCGA AGCCCCTCCC CTCCCTTCCC ATTCCCCTCC CCGCCCTCCG 
    CCTCTCCTCC TCCGCCTACG CCGCCCGCCG CCGCGACCTG CTCCGCTCGC 
    TCCGCTGCGG GATGAGGCGC TCAGACTTGG TGGCGGACCT GGAGCTTGCC 
    AAGGACAAGC AGTGGCAGGG GAGGCGTCCC AATGGCATTT TCTGGATCTT 
    GCTGCTCAAT GTTGGAATCT ATGTCGCTGA CCACTTGTTC CAGATTGAAC 
    ATATAAAGGC AATGTACTTG TACCATGCTT TCCCTAGTTG GTTTCAGTTT 
    GTGACATCAA CATTTTGCCA TGCGAACTGG AATCATCTTT CAAGCAATCT 
    ATTCTTTGTA TACATTTTTG GAAAGCTAGT TGAGGAGGAA GAAGGTAGTT 
    TTGCATTGTG GATGTCTTAC ATTTTGACTG GTGCTGGATC AAACTTAATT 
    TCATGGTTGG TTCTTCCAAC ATCTTCCGTG TCACTTGGAG CATCTGGTGC 
    TGTTTTTGGC CTTTTCACAA TCAGTGTCCT AGTGAAGATG TCATGGGACT 
    GGAGAAAGAT TCTTGAGGTC CTTATCCTTG GTCAATTTGT TGTTGACAAG 
    GTCATGGAAG CCGCACGGGC AACTACTGTT ACAGGGCACT CGCTGCAAGT 
    AAACAATATT GCCCATCTAT CTGGTGCTTT GATCGGTGCT GCATTAGTGT 
    TCCTGATAAA TCGTATCCCT TTTCCATCTG ATGGTGATAG TTCAAAATCT 
    TCAAAGGATA CCAGAGAAAA AAGAAGCTAA TTTATTCTCC ATTGTCCAAA 
    TTAAAACGGC CACTCTAACA AAATTAACCC AATGCATTTT ACTTTCCTTG 
    ATAGTTCTTT GTGTGCAAAG TCAGCTTAGT TCTGGTTTCT ATTTGAAAAG 
    AAGTCCTATG GAAGCTTAAG TTCCACTTAC GATACCTCGG AATCATTTCA 
    AGGGCTAAGT GTACTGCTGT TCCCAAAAGG AATAAAAGAA ATAAAGATTA 
    TCACTTTCTT GTGTCCGAGA AATTATGTAG TGAGGCTTCC AGCCGTTATC 
    AGACAGGACA TTTTGATTTG GCATTGTGTC CAGTGAATCT CATAGCTGGA 
    GAGAATCACA TCCCTTTGCA TGGACTACTG TTCTGTATAT GTCTTGGTTT 
    GCAGTCCAGA ATTATGATCT GTATAAGATT AAGAATATTA GCTCTTGCTG 
    TACTTCTTCT CAAGGAAATA AAAGAGCAAA TTTC

    Gene models with high sequence identity

    1. AT5G25752.1 [+] show detail - rhomboid-like protein 11
      E-value: 1e-81; Score: 300.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Peptidase S54, rhomboid 2.5e-23
    HMMPfam Peptidase S54, rhomboid 1.9e-24

    See the detailed result >

    AT5G25752.1

    Model type
    Protein coding
    Short Description
    rhomboid-like protein 11
    Curator Summary
    Chloroplast-localized rhomboid-like protein.
    Computational Description
    rhomboid-like protein 11 (RBL11); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: Rhomboid-related intramembrane serine protease family protein (TAIR:AT5G25640.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR