K17022

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17022

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • low brightness (PATO:0000327)
    (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17022

Determination of introduced cDNA(s)

  • J023006E15 - Rice Full-length cDNAs - Original: J023006E15

    full reading [+] show sequence

    Nucleotide sequence: J023006E15 - full reading 
    GACCGCGCAC GCGGCGAGGC TGCTTGCTAT CTCTTCCGGC CTTCCCTCTG 
    CTCTGCTCCC CCTTGCCGGC TCGGGCTCTC GGTTCTTGCA TTGCACCGCC 
    GTCCACGGAG ATGGTCGCTG CGGCGGAGTG GTGGGAGGCC ACCATCGCGG 
    CGTACACGGG GCTGTCTCCC GCGGCGTTCT TCACGGCCGT GGCGGTGGCC 
    GCCGCGCTGT ACGTCGCGGT GTCCGGTCTC CTCACGCGGC GGCCGCCGCC 
    GCTGCCTAGG AGACAGGAGG AGGCGAGGGC GTCGCAGCCG CTGCCGCCAC 
    CGGTGCAGCT CGGGGAGGTG ACGGAGGAGG AGCTGAGGGT CTACGACGGG 
    TCCGACCCCA ACAAGCCGCT GCTCATGGCC ATCAAGGGCC AAATCTACGA 
    TGTCACGCAG AGCAGGATGT TCTATGGACC TGGTGGCCCA TACGCACTGT 
    TTGCAGGCAG AGATGCTAGT AGAGCTTTGG CGAAGATGTC CTTCGAGCTG 
    GATGATTTAA CCGGCGACGT TTCTGGCTTA GGCCCCATTG AGCTCGAGGC 
    TCTACACGAA TGGGAGGGCA AATTCATGAG CAAGTACGTG AAGGTTGGAA 
    CAATCAAGAA GATCATCCCG GTGTCAGAGG GAGATGCTGC AACTCATGGT 
    GGGACATCTG ATAGAGGCAT CGATGTAGGC ACAATAGAGA GCAACCGTGT 
    GCCAGAACCA GAGGAAAATG GAGCTACAAG TCATGCAGAT GCAGTGGAAA 
    AATCAGATGC TGATGTGAGC ACACACAACC ACGAGGATGT TGTAGAGAAG 
    TCGGATGAGC TGCTGGAATC AGGTGTGGAT ACTAGAAGCA CCCATGAAGA 
    TGCAGTGGGG AAGCCAAAGG AAGAAACAGA AGATGCAGAT GTTCAGAAAA 
    CGATCAGCAC TGAAGTTGCA GGTGAGGGAA AGGGAGCACC TGATGAAGAT 
    GACAGGAACA CGTGCAGTCT GGAAGACGCA ATTGAGAAGC CAAAGGAAAC 
    GGCATACATT GATGTGAAGG ATACAAGCGG CCATGAAGTT GCTGGAGAAC 
    CAAAGGAAGC ACCAGATGTG GATGGGAACA ATACAAGCAG CAATCAAGAT 
    GGCAGTGGAT GAGCCGAAGG AAGCGTCACA TGAAGCGAAG GAAGCGTAGA 
    GTTGAGGCTA TTGCTGTGAT AATATCTGCA GGTAGTTAGC ATAATACAGT 
    GTTGAATCAA CAGAGAACCA GCAGGTGAGC TCTGTTGGGT TGAATCTTTG 
    TGTAGTGTGG AAATACCACT ATAATGCAAT AAGAATGTAA TAAGCTTGCG 
    CTGGTCC

    Gene models with high sequence identity

    1. AT3G48890.1 [+] show detail - membrane-associated progesterone binding protein 3
      E-value: 2e-51; Score: 200.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Cytochrome b5 2e-31
    superfamily Cytochrome b5 4.4e-32
    HMMPfam Cytochrome b5 4.1e-16
    HMMPanther STEROID BINDING PROTEIN 9.8e-85
    HMMPanther MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-REL 9.8e-85

    See the detailed result >

    AT3G48890.1

    Model type
    Protein coding
    Short Description
    membrane-associated progesterone binding protein 3
    Curator Summary
    putative progesterone-binding protein homolog (Atmp2) mRNA,
    Computational Description
    membrane-associated progesterone binding protein 3 (MAPR3); FUNCTIONS IN: heme binding; LOCATED IN: chloroplast thylakoid membrane, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: membrane steroid binding protein 1 (TAIR:AT5G52240.1); Has 1079 Blast hits to 1069 proteins in 199 species: Archae - 0; Bacteria - 2; Metazoa - 428; Fungi - 337; Plants - 203; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR