K17106

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17106

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17106

Determination of introduced cDNA(s)

  • J033097L18 - Rice Full-length cDNAs - Original: J033097L18

    full reading [+] show sequence

    Nucleotide sequence: J033097L18 - full reading 
    GAGAATGCTG TGTTAGGCAA GGTAGAGTAC ACTAGTCACA AGGCTCGCTC 
    TCTTGCTTAA GCTTGTGAGC TTGGAAAAGA GTAGTATATT GAGCTGTTGC 
    TTCGCTTGCT TTAGTTTGCT TGCTTACCAG GAGAAAGATA TGAGGAAGGA 
    AATTGTCATC AGGCTGCAGA GCTCTGAGAA GGGCCACAAG AAAGCTATCA 
    AGGTTGCTGC TGCAGTCTCC GGTGTGGAAT CCGTGACGCT CGCCGGCGAG 
    GACAAGAACC TGCTGCTGGT GATCGGCTTC GGGGTGGACT CCAACGACCT 
    CACCGAGAAG CTGCGGAGGA AGGTCGGCCA CGCCGAGGTG GTGGAGCTGC 
    GCACCGTCGA CGCCGACGAG CTCATGCGCG TCGCCGCCGC CAACCAGTAC 
    CCGTACCGCT ACTACCCCGG CGCGCCGCCC CCGGCCCCGT ACTACGGCAA 
    CGGCGGGTAC CCTCCTCCTC ACCAGCGCGG CGGCGGCGGC GGCGGCAGCG 
    GCGGTGGCTA CTACACGCCG ATGACGATGG CCACGGGTGG CTACTACGGC 
    GGCGGCGGCG GCGGGTACCC GCAGTACGGG CAGTCGTCGT CGTACCCGCA 
    GTACGGGCAG TCGTCGTCGT ACTACCCGCC GGCGGCGGCG GCGACGACGA 
    ACACGCACAC CGTCGTGCAC CACCAGTACG CCAACAACGA CCCGGACAGC 
    TGCGCCATCA TGTAGCTGCA CCAGCTAGTG TACGATCGAT GCTGCTTCTG 
    CTCGCGCGCG AGCATGCCGG CCGTCGTCGT CTCGATCGTC ACGATGATCG 
    GATGATCGGA GGACATATTG CGACCGAATC TAGTAGCTGA TTGTCCCAAT 
    CGATAACTGG CCCAAAGTAC GTAGATATAC CTTGAATTTT CTGTGTGATG 
    ATGAGGCCGA TTTGATTCCG TGTGATTACT GAACAACAGA CAGGTACGTA 
    CCTGTTGTCT GAAACTCTGA AGTCTGAACG TTATATGTGC AGTAGTATAT 
    GTGTAGTAGC TGCTCCCGGC CTCCAAGTGT ATACGGTGTG CAAGTGTAAA 
    TTAGGTGTAC TAGGGAGATA TATATAAGGT GCAAGCGACT TTATAGTTCA 
    TCAAAGTGTG CTCATTTGTA CATGCAAATT AAATCTGTAC ATGCGACTTT 
    ATAGTTCATC AAAGTGAGTA ATTCTGTAGT ACGGAGAGCT TGCTGTTCTT 
    CCCTCTTTGG CC

    Gene models with high sequence identity

    1. AT4G05030.1 [+] show detail - Copper transport protein family
      E-value: 5e-07; Score: 52.80

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther UNCHARACTERIZED 1.6e-88
    HMMPanther COPPER TRANSPORT PROTEIN ATOX1-RELATED 1.6e-88

    See the detailed result >

    AT4G05030.1

    Model type
    Protein coding
    Short Description
    Copper transport protein family
    Computational Description
    Copper transport protein family; FUNCTIONS IN: metal ion binding; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: Copper transport protein family (TAIR:AT3G20180.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR