K17251

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17251

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17251

Determination of introduced cDNA(s)

  • J023027D10 - Rice Full-length cDNAs - Original: J023027D10

    full reading [+] show sequence

    Nucleotide sequence: J023027D10 - full reading 
    GATCTCATTG TTCTTCTTCT TTCTCCGTCT CTCTCTCTCT CTCTCTCGCT 
    GTCTTTCCGA GCAGCAAGCA GCAATGGCGG CGGCGATGAT TCTCTCCTGC 
    AGGTATCTGC TCATCTGCAG CGCGACGCTT GCGCTGCTGC TGCTGCGACT 
    GTGCAGCGGG CTGAGCCTGG ACACGGTGAG GGAGTTCCTC ACGAGGGAGG 
    AGGACACCGT CGTGTTCGGC CTCATCGAGC GGGCCAAGCA CCCGCGCAAC 
    ACGCCGGCCT ACGACCCCGG CTACCTCGCC GGCGGCGGCC ATGGCCACGA 
    CGCCTCTTTC GCCGAGATGT TCGTGCGCGA GTCCGAGGCG GTTCAGGCCA 
    AGGCAGGAAG GTACCAAAGC CTGCAGGAGA TTCCTTTCTT CCCTTTCAGA 
    GTGCCTTTCA CATTGGCACC TCCATATAAC TTCACAACCG AGCTGTATTC 
    TGCAGCCGCA TTAGTTAATG TGAATGATGC CATATGGAGC ATGTATTTCA 
    ATGAGTTGCT CCCTCTCCTG GCCAAGAATG GCAATGATGG CAACTATGCT 
    GCAACTGTTT CATCAGATCT TGTATGTCTG CAGGCACTCT CAAGAAGGAT 
    CAACTATGGG AGGTATGTGG CAGAAGTGAA GTTCATAGGC GACCAGCAGA 
    ACTACACAAC TTTAATTCGT AACAAGGACA CGGATGCCCT GATGAAATTG 
    TTGACATCTG AAGCCCAGGA AGATGTGGTG AAGAGAAGGG TTCAGAAGAA 
    GGCCATGGTG TTCGGTCAAA ATGTGACATT GGATGGACCA GTTGAAACTG 
    GCAACAGCAA CAGTAGCCAA ACAAGTTTCA AAGTTGATCC TTCATTAGTG 
    TATAAACTGT ATGACAAATG GGTGATTCCA TTGACTAAAC AAGTGGAGGT 
    CGAGTACCTG CTCCATCGTC TTGATTGAAT CAAGCATTTA TCTAGCTAAC 
    CTATTTGTTC AAAGTGTAAC TAAGTTGTCA CATGAAAGAT TGAAATGATA 
    CACCAATAAT AACATGCAGC AAGGTCTGCA GATTGTTCAG TCC

    Gene models with high sequence identity

    1. AT5G10870.1 [+] show detail - chorismate mutase 2
      E-value: 2e-67; Score: 253.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPIR Chorismate mutase, AroQ class, eukaryotic type 1.2e-98
    HMMPanther Chorismate mutase, AroQ class, eukaryotic type 1.7e-88
    HMMTigr Chorismate mutase, AroQ class, eukaryotic type 1.5e-86
    superfamily Chorismate mutase, type II 4.6e-89
    ProfileScan Chorismate mutase, AroQ class, eukaryotic type 73.446
    Gene3D Chorismate mutase, AroQ class, eukaryotic type 1.9e-91

    See the detailed result >

    AT5G10870.1

    Model type
    Protein coding
    Short Description
    chorismate mutase 2
    Curator Summary
    Encodes chorismate mutase AtCM2.
    Computational Description
    chorismate mutase 2 (CM2); CONTAINS InterPro DOMAIN/s: Chorismate mutase, type II (InterPro:IPR020822), Chorismate mutase, AroQ class, eukaryotic type (InterPro:IPR008238); BEST Arabidopsis thaliana protein match is: chorismate mutase 3 (TAIR:AT1G69370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR