K17335

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17335

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17335

Determination of introduced cDNA(s)

  • J023148L05 - Rice Full-length cDNAs - Original: J023148L05

    full reading [+] show sequence

    Nucleotide sequence: J023148L05 - full reading 
    GACTCCAGTA CTCCACCACA AGCTCTAGCT TACAGCTCAC TACCAGCGTA 
    CATTGTTGCT AGTTAGCTAG AGCTAGATCT CGATCGAGAC AATGGCGGGT 
    GCTCGCAGGA CGATGGCGCT GGTTGCGTTG GTGGCGGTGG TGGCGGCGGC 
    GGTGGTGGCG GAGAGGGCGT CGGCGGCGGT GAGCTGCGGC GACGTGACGT 
    CGTCGATCGC GCCGTGCCTG TCGTACGTGA TGGGGAGGGA GAGCTCGCCG 
    TCGTCGTCGT GCTGCAGCGG GGTGAGGACC CTCAACGGCA AGGCCTCCTC 
    CTCCGCCGAC CGCCGCACCG CCTGCAGCTG CCTCAAGAAC ATGGCCTCCT 
    CCTTCAGGAA CCTCAACATG GGCAACGCCG CCTCCATCCC CAGCAAATGT 
    GGCGTCTCCG TCGCCTTCCC CATCAGCACC TCCGTCGACT GCTCCAAGAT 
    CAACTAATTA CTAGCTTGAT CATCTCCAGC TGAGATCGAT ATGTATGGGA 
    AGATCTAGAG AGTGACTGTT CACTGCTAGC TTTGTTTATT TTCTTGCTGC 
    ATGCGTACGT GCACTATATA ATGTAATAAT GCGTTTCAAT GTTTACATGT 
    AGTGTACTAT GTACACTACT TATATATTTT TCATATATAT AATAATCTAA 
    TAATAATAAT GTTGTACTG

    Gene models with high sequence identity

    1. AT5G59320.1 [+] show detail - lipid transfer protein 3
      E-value: 6e-15; Score: 77.80

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 2.1e-33
    PatternScan Plant lipid transfer protein/Par allergen 0
    FPrintScan Plant lipid transfer protein/Par allergen 6e-30
    FPrintScan Plant lipid transfer protein/Par allergen 6e-30
    FPrintScan Plant lipid transfer protein/Par allergen 6e-30
    FPrintScan Plant lipid transfer protein/Par allergen 6e-30
    FPrintScan Plant lipid transfer protein/Par allergen 6e-30
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 1.3e-32
    HMMPfam Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 5.1e-10
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 6.3e-13

    See the detailed result >

    AT5G59320.1

    Model type
    Protein coding
    Short Description
    lipid transfer protein 3
    Curator Summary
    Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.
    Computational Description
    lipid transfer protein 3 (LTP3); FUNCTIONS IN: lipid binding; INVOLVED IN: response to water deprivation, response to abscisic acid stimulus; LOCATED IN: cell wall, apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: lipid transfer protein 4 (TAIR:AT5G59310.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR