K17338

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17338

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • decreased length (PATO:0000574)
    (Silique::Shape::short)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17338

Determination of introduced cDNA(s)

  • J013151M04 - Rice Full-length cDNAs - Original: J013151M04

    full reading [+] show sequence

    Nucleotide sequence: J013151M04 - full reading 
    TTGAGGCGAT CGATGGAATA ATAATCGTGT AGCGCTAAGC GAATCATTTC 
    TCTTTTTAGA TAGTTTGGAT GTCTAACAAT GCCCATGATT CATGATCTTT 
    TAATTGAACT AAGAAAAATT AATCCATGGT GGATCTGCTT GGCATCAAAA 
    GGCATGGGGG ACTCCAAGGA GTTCGCCGGC GAGCTGTTCG TGGCGCTGGC 
    GCGGCGGAGG AACCTGGAGC CGGAGGACGG CATCACCAAG GAGCAGCTCA 
    AGGAGTTCTG GGAGGAGATG ACCGACCAGA ACTTCGACTC GCGGCTTCGC 
    ATTTTCTTTG ACATGTGCGA CAAGAATGGC GATGGGATGC TCACGGAAGA 
    TGAGGTCAAG GAGGTTATTA TACTGAGTGC GTCGGCGAAC AAGCTGGCGA 
    AGCTGAAGGG ACACGCGGCG ACGTACGCGT CGCTGATCAT GGAGGAGCTG 
    GACCCGGACG ACCGCGGGTA CATCGAGATC TGGCAGCTGG AGACGCTGCT 
    GCGCGGCATG GTGAGCGCGC AGGCGGCGCC GGAGAAGATG AAGCGGACGA 
    CGTCGAGCCT CGCGAGGACG ATGATCCCGT CGCGGTACCG GAGCCCGCTG 
    AAGCGGCACG TGTCCAGGAC GGTGGACTTC GTGCACGAGA ACTGGAAGCG 
    GATCTGGCTC GTCGCGCTGT GGCTCGCCGT CAACGTCGGC CTCTTCGCCT 
    ACAAGTTCGA GCAGTACGAG CGGCGCGCCG CGTTCCAGGT GATGGGCCAC 
    TGCGTGTGCG TGGCCAAGGG CGCCGCCGAG GTGCTCAAGC TCAACATGGC 
    GCTCATCCTC CTCCCCGTGT GCCGGAACGC GCTCACCACG CTCAGGTCCA 
    CGGCGCTCAG CCACGTCATC CCCTTCGACG ACAACATCAA CTTCCACAAG 
    GTGATCGCGG CGACCATCGC CGCCGCCACC GCCGTCCACA CGCTGGCGCA 
    CGTCACCTGC GACTTCCCGA GGCTGATCAA CTGCCCCAGC GACAAGTTCA 
    TGGCGACGCT GGGGCCGAAC TTCGGGTACA GGCAGCCGAC GTACGCCGAC 
    CTGCTGGAGA GCGCCCCCGG CGTCACCGGC ATCCTCATGA TCATCATCAT 
    GTCCTTCTCC TTCACGCTGG CCACGCACTC CTTCCGCCGG AGCGTCGTCA 
    AGCTGCCGTC GCCGCTGCAC CACCTCGCCG GCTTCAACGC CTTCTGGTAC 
    GCGCACCACC TCCTGGTGCT CGCCTACGTC CTCCTCGTCG TGCACTCCTA 
    CTTCATATTC CTCACCAGGG AGTGGTACAA GAAAACGACA TGGATGTACC 
    TGATAGTCCC AGTGCTCTTC TATGCATGCG AGAGAACGAT CAGAAAAGTT 
    CGAGAGAACA ACTACCGCGT GAGCATCGTC AAGGCAGCGA TTTACCCAGG 
    AAATGTGCTC TCTCTTCACA TGAAGAAGCC GCCGGGTTTC AAGTACAAGA 
    GCGGGATGTA CCTGTTTGTG AAGTGCCCTG ATGTCTCTCC TTTCGAATGG 
    CATCCCTTCT CCATCACTTC TGCACCTGGA GATGACTACC TGAGTGTGCA 
    TATCCGTACA CTAGGTGACT GGACGACTGA ACTCAGAAAC CTGTTTGGGA 
    AGGCTTGCGA GGCACAGGTT ACTTCTAAGA AGGCTACCCT TTCAAGACTT 
    GAAACTACAG TTGTGGCGGA CGCTCAGACA GAGGATACTA GGTTTCCTAA 
    GGTCCTTATT GATGGGCCCT ATGGTGCACC GGCGCAAAAC TACAAGAAGT 
    ATGACATTCT TTTGCTTATT GGTCTTGGAA TTGGTGCTAC TCCTTTCATC 
    AGCATTCTGA AGGATCTGTT GAACAACATT AAATCCAACG AAGAGGTGGA 
    AAGCATACAT GGTTCTGAGA TAGGCAGCTT CAAGAACAAT GGGCCAGGAA 
    GAGCTTACTT CTACTGGGTG ACCAGAGAGC AAGGGTCCTT CGAGTGGTTT 
    AAAGGAGTCA TGGACGATGT CGCTGAAAGT GATCACAATA ATATTATAGA 
    GATGCACAAT TACCTGACCA GCGTGTATGA AGAAGGCGAC GCAAGGTCAG 
    CTTTGATTGC CATGGTTCAG TCACTTCAAC ATGCCAAAAA TGGTGTGGAT 
    ATCGTCTCCG GCAGCAGGAT TCGCACACAT TTTGCGAGGC CTAACTGGAG 
    AAAGGTGTTC TCTGACTTGG CGAATGCCCA CAAAAACTCA CGCATAGGTG 
    TTTTCTATTG TGGATCCCCT ACACTCACGA AACAACTCAA GGATCTTTCA 
    AAAGAATTCA GCCAGACAAC CACAACTAGA TTCCACTTCC ACAAGGAAAA 
    CTTTTAAGAC CGTACCAAAG GACGTCTAAA CAGACTGCAT ATACTTGTAT 
    AGGAAAGAAA TACGATAGCA TTGGGATAGC AAATATAGTC TTACAAGTTT 
    TGCTCTACGA TGGATTGTAC AAAATATATG TTGAAAGCTA GTGTCACCAT 
    CGTGCATAGA TTCTGGAATG TTTACAGATA TATGTATTGG AACAGTGGGA 
    ATGCATGTTA GAAAAATTGA GTTCC

    Gene models with high sequence identity

    1. AT5G60010.1 [+] show detail - ferric reductase-like transmembrane component family protein
      E-value: 0; Score: 870.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D EF-hand-like domain 0.00029
    PatternScan EF-Hand 1, calcium-binding site 0
    superfamily Riboflavin synthase-like beta-barrel 3.1e-17
    superfamily EF-hand 3.1e-14
    superfamily Ferredoxin reductase-like, C-terminal NADP-li 2.4e-12
    HMMPanther RESPIRATORY BURST OXIDASE 0
    HMMPanther NADPH OXIDASE 0
    FPrintScan Cytochrome b245, heavy chain 8.6e-21
    FPrintScan Cytochrome b245, heavy chain 8.6e-21
    FPrintScan Cytochrome b245, heavy chain 8.6e-21
    FPrintScan Cytochrome b245, heavy chain 8.6e-21
    ProfileScan EF-HAND 2 11.389
    ProfileScan EF-HAND 2 5.085
    ProfileScan Ferredoxin reductase-type FAD-binding domain 13.842
    HMMPfam Ferric reductase, NAD binding 6.8e-47
    HMMPfam FAD-binding 8 5.7e-30
    HMMPfam NADPH oxidase Respiratory burst 2.1e-16
    HMMPfam Ferric reductase-like transmembrane component, N-terminal 1.7e-15

    See the detailed result >

    AT5G60010.1

    Model type
    Protein coding
    Short Description
    ferric reductase-like transmembrane component family protein
    Computational Description
    ferric reductase-like transmembrane component family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Cytochrome b245, heavy chain (InterPro:IPR000778), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), Ferric reductase-like transmembrane component, N-terminal (InterPro:IPR013130), NADPH oxidase Respiratory burst (InterPro:IPR013623), Ferric reductase, NAD binding (InterPro:IPR013121), EF-HAND 2 (InterPro:IPR018249), FAD-binding 8 (InterPro:IPR013112), Riboflavin synthase-like beta-barrel (InterPro:IPR017938); BEST Arabidopsis thaliana protein match is: ferric reductase-like transmembrane component family protein (TAIR:AT3G45810.1); Has 1927 Blast hits to 1788 proteins in 283 species: Archae - 0; Bacteria - 154; Metazoa - 723; Fungi - 353; Plants - 523; Viruses - 0; Other Eukaryotes - 174 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR