K17346

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17346

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17346

Determination of introduced cDNA(s)

  • J023023P10 - Rice Full-length cDNAs - Original: J023023P10

    full reading [+] show sequence

    Nucleotide sequence: J023023P10 - full reading 
    GATAGATTGC AAAAGCTAGC TGTCTGGGAG ATGGTGGTGG ATGAAGGGAT 
    GTGCTGCTAG CAGAAATGGT GATCGGGAGC AAATGTGGGT TGATGATTCT 
    CGTACCAGAA GCATTGTTTG ATACGATTTT GATCAGCTGG CGGGAGAGGA 
    AACATGTCAT CGGAATCGGA TCAAGCCCCC TCGCCAAGCT CGCCCTCGTC 
    GTCGTCGTCG TCGTCGTCAG GAAATGGTTC CAACAAGGCG CCTCCGCCGG 
    AAGAGTCTGA TAATTCGAGC AGCAATGGGT CGTCGTCGTC TAGCCCGACA 
    CCTCCTTCGT CGCAGAGCTC CGACTCCGAC TCCGGAGGAG GCTCGAGTTC 
    GCCGTCACAA GGCTCGTCCT CGCCTAGCCC GCCTCCGCCG TCGGGGAGCT 
    CTTCCGAGTC GCATTCGTCT CCACCGCCGG CGCCGCCCCA GTCTTCTTCT 
    TCTTCTTCTT CTTCTTCTTC GAGTGGTGGA GGTTCCAAGT CTTCGCCGGA 
    GGCACCGTCT CCGCCATCCG AGTCATCTGG AAATGGTGGC GGTGGCGGCG 
    GCGGCGGCCG CTCCTCGCCG CCGCCAAACT GGTCGCCCCC TCCGCAGCAG 
    CAGCAGCAGC ACCAGTCCGG AGGCTCAACT CCATCACCTC CTCCGTCTCC 
    GTCCTCTAAC CAGCCACCGC CATCGAGTGG CTCGTCAGCG TCATCGTCGG 
    AACCATCTCC GCCTCGCTCA TCGCCGCCGC CATCGCCGCC GCAATCAAGT 
    GGCGGCAATA ATGGCCAACC GCCTAAACCT TCCGGCGGGC AGCAGCAAGC 
    TCCTCCGCAG TCACCTCCGT CGGCGGCGAA CCAGTCGGTG GTGTTCATTC 
    CCGTCCCGGT GGCGTCGAAC AGCCCTCCCG GAATGCTGCC GCCACCGCAG 
    GTGATCGACG CCACGCCCTC CGGCGCCATC TCGTCGACCA ACTTCCCCGG 
    AGGAAGAAAC AGCACGGCGG GCTCCTCCAA CACTTCATTG TCACAGCAGC 
    AACACACAAC CGTAAGCTCG ACGGCCCAGG CCAGCAGCAG CGGCCACATA 
    GCCGCCGCCA TCGCCGGCGC CGCGGTCACG GGCCTCCTGT GTGCCATAGT 
    GGCCATCTAC CTCATCGTGT CGAGCCGGAG GAAGAAGAAG ATGGATGGGC 
    TGGTCTACCA CTACGATGGC AACAACTACT TCGTGCCATC GTCTCAGTTT 
    GGCGGGTCAA GCCGCAACCA CCACCCACCA CCGTCGGCGA TTATGCTCAA 
    CTCCGGTGGG GCGTCAGCGG ACGGCGGCGG GTACTACAAT TCGGGGACAT 
    TCTCGGGCGG AGAGGGGACA GGGCCGGCGG GGTCCAAGTC GCGGTTCAGC 
    TACGAGGAGC TGACGGGGAT CACCAGCAAC TTCTCGCGGG ACAACGTGAT 
    CGGCGAGGGC GGGTTTGGGT GCGTGTACAA GGGGTGGCTA AGCGACGGCA 
    AGTGCGTGGC CGTGAAGCAG CTCAAGGCCG GGAGCGGGCA GGGGGAGCGG 
    GAGTTCCAGG CGGAGGTGGA GATCATCAGC CGCGTCCACC ACCGCCACCT 
    CGTCTCCCTC GTCGGCTACT GCATCGCCGC GCACCACCGC ATGCTCATCT 
    ACGAGTTCGT TCCCAACGGC ACCCTCGAAC ACCACCTTCA TGGCCGTGGC 
    ATGCCAGTGA TGGACTGGCC GACGAGGCTG CGGATTGCCA TTGGTGCAGC 
    CAAGGGGCTA GCATACCTAC ACGAGGACTG CCACCCGCGG ATTATCCACC 
    GGGACATCAA GACCGCCAAT ATCCTACTGG ACTACTCGTG GGAAGCACAG 
    GTGGCAGACT TTGGGCTTGC GAAGCTGGCG AATGATACGC ACACTCACGT 
    GTCGACGCGC ATCATGGGCA CCTTCGGGTA CCTAGCGCCA GAGTACGCCT 
    CCAGCGGCAA GCTCACGGAC CGCTCCGACG TCTTCTCCTT TGGTGTCGTC 
    CTACTGGAGC TCATCACCGG CCGCAAGCCG GTTGACCAGA CGCAGCCCCT 
    CGGAGAGGAG AGCCTCGTCG AATGGGCACG ACCAGTGCTG GCGGATGCGG 
    TAGAGACGGG TGATCTCAGT GAGCTGGTTG ATCCACGGCT AGAGGGCGCA 
    TACAACCGCA ATGAGATGAT GACGATGGTG GAAGCAGCGG CCGCATGTGT 
    TCGCCACTCC GCTCCCAAAC GGCCGCGGAT GGTGCAGGTG ATGCGGGTAC 
    TAGATGAGGG GAGCATGACG GACCTTAGCA ATGGGATCAA GGTGGGGCAG 
    AGCCAAGTGT TCACTGGTGG CAGCGACGCT GCTGACATCC AGCAACTCCG 
    TCGTATCGCA TTCGCCTCCG AGGAGTTCAC CGGAGAGTTT GAGCAGAGAA 
    CAACCAACTC CAACTCTGAG TCGCGGCCGA TGAATCGGAT ACCAGAGTAA 
    TAACGCCTTG TATGTTTTGA AGTGCTTAGC ACCGGTGCAA TTACGTGATA 
    AGGGTGACAA CAAGAGGTGA GTCCATATAG AACTGAACTG AACTCAAAAA 
    CACATGTAGG AAATTCAGGG TTTTGGGTCT AATTTTCGGC AGTTTGTACT 
    TATGTACTTC AAAACCCTTT TGCACATGGA GGACATTCAA TCAAGTGATA 
    AAGATATAGG GAAATCAGTC TATTAGGATC CATAATGGTT TGCTAAGCAC 
    ATACCATCAG CATGATGATT T

    Gene models with high sequence identity

    1. AT1G23540.1 [+] show detail - Protein kinase superfamily protein
      E-value: 4e-144; Score: 509.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.7e-186
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 8.7e-83
    Gene3D no description 6.9e-24
    Gene3D no description 4.1e-52
    ProfileScan Protein kinase, catalytic domain 37.474
    HMMPfam Serine-threonine/tyrosine-protein kinase 8.7e-46
    HMMSmart Serine/threonine-protein kinase domain 2.4e-33
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.3e-28

    See the detailed result >

    AT1G23540.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Curator Summary
    Encodes a member of the PERK family of putative receptor kinases. Overexpression leads to morphological defects and reduced fertility and increased expression of MAX genes.
    Computational Description
    INFLORESCENCE GROWTH INHIBITOR 1 (IGI1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: developmental process; LOCATED IN: chloroplast; EXPRESSED IN: male gametophyte, flower, anther, root, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: root hair specific 10 (TAIR:AT1G70460.1); Has 385447 Blast hits to 227080 proteins in 6289 species: Archae - 678; Bacteria - 66210; Metazoa - 145576; Fungi - 56663; Plants - 56890; Viruses - 7200; Other Eukaryotes - 52230 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR