K17445

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17445

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17445

Determination of introduced cDNA(s)

J013098I05 - Rice Full-length cDNAs - Original: J013098I05

full reading [+] show sequence

GAGTCATCCA CTCCACACCA CCACACACTC CCCTTCCCTT CCTTCTCCGG 
TCTCCTCCCT CTCTCGTCGT CGTCGTCGTC GCCGTCGCCG GCTCGCCGCG 
TTCTCCTCCG CCGCCGCTGC TGAGCCGGGA TGGCCGCGCG TAGCCCCTAC 
TTCGTCCCCG AGAGCGAGGG GATCCGGGCC GGGGAGTCGC CGGCCGCGGC 
GCTCCGCAGG ATCCTCGCGT CGCCGGGGGC GCACCAGGCC CCCTGCTGCT 
TCGACGCGCT CGGCGCCCGC CTCATCCAGC GCGCGGGGTT CCCGATCTGC 
TTCATGGGCG GTTTCTGTGT TTCTGCCGCA CGACTTGGAT TGCCAGATGC 
TGGTCTCATC TCATATGGAG AAATGGTAGA TCAAGGGCGT CTGATCACTG 
AAGCTGTATC ACTCCCAGTT ATCGGCGATG GTGATAATGG CTATGGAAAT 
GCTATGAGCA TTAAGAGAAC CGTAAAAGGG TATATTAATG CTGGTTTTGC 
TGGAATCATG CTCGAAGATC AGGTGGCACC AAAAGCATGT GGACATACTG 
AAGGAAGGAA AGTTATCTCA AGGGAGGATG CTATCATGCA CATAAAAGCT 
GCCGTAGATG CTAGGAAAGA GAGTGGTTCT GACATTGTTA TCATTGCAAG 
GTCAGACTCT CGTCAAGCTA TCTCTATTGA TGAAGCGCTA TGGAGGGTAC 
AGGCTTTTGC CGATGCTGGA GCAGATGTTC TATTCATTGA TGCTCTTGCT 
TCAATAGAAG AGATGAAAGC ATTTTGTGCG GTTTCACCTA AAGTTCCAAA 
GATGGCAAAC ATGCTAGAAG GTGGTGGTAA AACTCCCATA TTGAGCCCTG 
CTGAACTTCA GGAGATTGGT TTTAGCCTCG TAGTCTACCC ATTGTCCCTG 
ATTGGGGTAT CAATGCTCGC AATGGAGGAT GCTCTGATTG CGATAAAAAG 
TACTGGTGCA CCCCGACCTG GTAGCTTGCC ATCTTTTCAG GAGATCAAGG 
ATACTCTAGG GTTTAACCGA TATTACAAAG AAGAAAAGCA ATATGCAACA 
GTCCAGCAAG CCCAGCCATT ATCCACAAAT ATTGTACTTC GATTAAAGAT 
CACAGAAAAA AGTGGAACGC AGAAGATAAA TGAAGGGATA CCTGCTGGAA 
TCCTAGAGAA GATATCAAAA GCTATTCCAG GCTTGGCTGG TGTCAATTTG 
ACGGAAATAC TTCAGGGTGC AGATCAGTCC CAGAAAGGAA AATTGCTGCT 
TGATCGTGAG GATGCAACTG GCGACAGGAT CCAGGTGTCC ATCGAGTGAT 
CAATGCCTAC ATACATTGCC TAGAAGCATG GATGGCCAGT AATGTAGGGC 
AAATCGCCTT CAATATTGAA GCAAACGATT TTCCAAGTTG TAATGGTAGC 
CGTTTAGCGT AGTACCTTGA AGTGTTACTT CTGCGAGTTG GGTTTTCCTC 
TTTGCGTTGC CTTGTGGTGT TAATAATCCT GGATTCCTGT GTTGATTCAA 
ATAAAAGAAA CCTATCATCA GGGGCTTTAG AATGTTCTTT TCTGCAGACC 
TACGGCAACA AATGCCAGGG ATCATGACAG CAATCTTC

Gene models with high sequence identity

AT2G43180.1 [+] show detail - Phosphoenolpyruvate carboxylase family protein
E-value: 2e-119; Score: 426.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	CARBOXYPHOSPHONOENOLPYRUVATE MUTASE	3.9e-141
HMMPanther	ISOCITRATE LYASE/MALATE SYNTHASE	3.9e-141
Gene3D	Pyruvate/Phosphoenolpyruvate kinase, catalytic core	5.1e-77
superfamily	Pyruvate/Phosphoenolpyruvate kinase, catalytic core	2.2e-87
HMMPfam	Isocitrate lyase/phosphorylmutase	3e-13

See the detailed result >

AT2G43180.1

Model type: Protein coding
Short Description: Phosphoenolpyruvate carboxylase family protein
Computational Description: Phosphoenolpyruvate carboxylase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyruvate/Phosphoenolpyruvate kinase, catalytic core (InterPro:IPR015813), Isocitrate lyase/phosphorylmutase (InterPro:IPR000918); BEST Arabidopsis thaliana protein match is: Phosphoenolpyruvate carboxylase family protein (TAIR:AT1G77060.1); Has 5459 Blast hits to 5459 proteins in 1102 species: Archae - 78; Bacteria - 2773; Metazoa - 20; Fungi - 198; Plants - 102; Viruses - 0; Other Eukaryotes - 2288 (source: NCBI BLink).
Link: InterPro Scan - TAIR