K17502

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17502

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17502

Determination of introduced cDNA(s)

  • J033051K20 - Rice Full-length cDNAs - Original: J033051K20

    full reading [+] show sequence

    Nucleotide sequence: J033051K20 - full reading 
    GGTTCATCAC TCCCTCCCCA TTTTACCGTT GAGGTCGGCG ACCTCCGCGG 
    ACGGTACGGC GGGACACTAG CCCGTCCCGA GGGGCAATCC CGTAATTTTC 
    GCGCAGTACA GTGCCTCCCA GCGCAGTGGC TTCGCCCCAC GCCCTACTGT 
    TTTAAATCCC CCTGCCGCTC TCCTCCGCCG TCTTCTTCCC CCCCTTCCTC 
    TCCACCACCC CCGATTCGTC GTCCACCACC GTTCGACGAG TTTCTCGCAG 
    ATCGGGCGGG GGCGCGCCGG GATGGCGTAC ATGTGCGCGG ACAGCGGCAA 
    CCTCATGGCC ATCGCGCAGC AGGTGATCCA GCAGCAGCAG CAGCAGCAAC 
    AGCAGCAGCA GAGGCACCAC CACCACCACC ATCTGCCGCC GCCGCCGCCG 
    CCGCAGTCGA TGGCGCCGCA CCACCACCAG CAGAAGCACC ACCACCACCA 
    CCAGCAGATG CCGGCGATGC CGCAGGCGCC GCCCTCGTCG CACGGCCAGA 
    TCCCGGGCCA GCTCGCGTAC GGTGGCGGCG CGGCGTGGCC CGCCGGGGAG 
    CACTTCTTCG CGGACGCGTT CGGGGCGTCC GCCGGCGACG CGGTGTTCTC 
    CGACCTCGCG GCGGCCGCGG ACTTCGACTC TGATGGGTGG ATGGAGAGCC 
    TTATTGGGGA CGCCCCCTTC CAGGACTCCG ACCTGGAACG CCTCATCTTC 
    ACCACCCCGC CGCCGCCCGT GCCGTCCCCA CCCCCCACGC ATGCCGCCGC 
    CACCGCCACC GCCACCGCCG CCACCGCCGC TCCTCGACCT GAGGCTGCAC 
    CGGCTTTGCT CCCCCAGCCT GCTGCTGCGA CCCCGGTGGC GTGTTCGTCT 
    CCGAGTCCGA GTTCCGCGGA CGCCTCCTGC TCCGCTCCCA TCCTCCAGTC 
    CCTCCTGTCC TGCTCCCGCG CGGCGGCGAC CGACCCTGGC CTCGCCGCCG 
    CGGAGCTCGC CAGCGTCCGC GCCGCCGCGA CTGACGCCGG GGACCCATCT 
    GAGCGCTTGG CCTTCTACTT CGCTGACGCG CTTAGTCGCC GCCTTGCGTG 
    CGGCACCGGA GCTCCGCCCT CCGCGGAGCC GGACGCGCGG TTCGCCTCCG 
    ACGAGCTCAC GCTCTGCTAC AAGACGCTCA ACGACGCCTG CCCCTACTCC 
    AAGTTCGCGC ACCTCACCGC CAACCAGGCC ATCCTGGAGG CCACAGGCGC 
    GGCGACCAAG ATCCACATAG TTGACTTCGG GATCGTGCAG GGCATCCAGT 
    GGGCGGCGCT GCTTCAGGCG CTCGCCACCC GGCCCGAGGG GAAGCCAACG 
    CGGATACGGA TCACCGGCGT CCCCTCGCCG CTCCTGGGGC CGCAGCCCGC 
    GGCGTCCCTC GCCGCCACCA ATACCCGTCT CCGTGACTTC GCCAAGCTCC 
    TCGGGGTGGA CTTCGAGTTC GTCCCATTGC TCCGGCCTGT GCACGAGCTC 
    AACAAGTCGG ATTTCTTGGT TGAACCTGAC GAGGCCGTGG CCGTCAATTT 
    CATGCTGCAG CTGTACCACC TTCTTGGCGA CTCGGACGAG CTAGTGAGAA 
    GAGTGCTTCG TCTTGCCAAA TCGCTCAGTC CAGCAGTGGT CACACTTGGA 
    GAGTACGAGG TCAGCCTGAA CCGAGCTGGG TTCGTCGACC GGTTCGCCAA 
    TGCGTTGAGC TATTACCGGT CATTGTTCGA GTCGCTGGAT GTGGCAATGA 
    CCCGGGACTC ACCGGAGAGG GTGAGGGTGG AGCGTTGGAT GTTCGGGGAG 
    CGAATTCAGA GGGCCGTCGG GCCGGAGGAA GGCGCAGACC GGACGGAGAG 
    GATGGCCGGC AGCAGCGAGT GGCAGACCCT GATGGAGTGG TGCGGCTTCG 
    AGCCCGTGCC GCTCAGCAAC TATGCCAGGA GCCAGGCTGA TCTTTTGCTC 
    TGGAACTATG ATTCCAAGTA CAAGTATTCA CTTGTTGAGT TGCCACCGGC 
    GTTCTTGTCC TTGGCATGGG AGAAACGGCC ATTGCTTACT GTGTCTGCTT 
    GGAGGTGAGG GTAGTTTTTT TGGGAGTATT TGGGGGAATG TGTGGCGTTG 
    TGATAGAACC TGGGAGGAAA TAGTTAGGAG AAATCATTTT GCAGCTTTTG 
    TTGTAGTTTC CTCCAAAACT GTGTTTAGGA TGATTGGTAT AATTGGGAAA 
    TTTTAGCTGA ATTATCTTGC T

    Gene models with high sequence identity

    1. AT5G66770.1 [+] show detail - GRAS family transcription factor
      E-value: 5e-117; Score: 419.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Transcription factor GRAS 57.782
    HMMPfam Transcription factor GRAS 1.5e-105

    See the detailed result >

    AT5G66770.1

    Model type
    Protein coding
    Short Description
    GRAS family transcription factor
    Computational Description
    GRAS family transcription factor; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT3G50650.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR