K17506

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17506

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17506

Determination of introduced cDNA(s)

  • J013049E01 - Rice Full-length cDNAs - Original: J013049E01

    full reading [+] show sequence

    Nucleotide sequence: J013049E01 - full reading 
    TCTTTGAAGG TATTAGGATA GTCACAAAAT TTATCTACAT ATATATGAAG 
    CAAGTAAAGA AATATTATTC AAATGCTAGT TTCTCTATTT CTTAGCAACT 
    GAAGTACTCA ATCTATCCCA GAATAGTTTT TTACATGGTC TCTAACATAG 
    AACTTTTTCC TTTTAATTTA TTTTCCATAA GATATTATGA ATGCTCTTTT 
    AAATACGAAT CTAATAATAT CACATGCATG GCACAAAACA TTGTTAGTTA 
    TTTTACTTAT TAGTCAAGGG AAAATGTTGA TTTTCCTAAA TTATATTCTG 
    AAAAAATGTC TCAATTGTTG GTGATATAGT ACATGCAGAT ACAACAAAAT 
    TTCATAAGGA CGTTAGATTG TTCGCATTTC CTGGGACATA AAAAAATCGT 
    ATGGATCTTA TTTCAAAAAA AATTGTATGG AGAGGCTATA CGCTATAATA 
    TTGTGCACAT TTAACAAAAA GATTGTTGGT AGATAAAAAA TCTATTTTCC 
    CTAGAAGTGT AAGAGAATGT CTAGGTTTAC CATTAGGGCA GTATTGTTAG 
    TTAAATTAAA ATCATTCTTT TTGTATCAAC TCAAAATTAT AACATTGGAT 
    AATACTATCA ACTCAGAGAA TAATCTGTTA ATTGTTGATG ATTTTCTCCA 
    AATCTGGACT GCTAAAGAAA TTATAAAACC AGTTACCATT GTTTTATTTT 
    TGTCTGGTAA CTGTTTTACT TTTCAGATTA ACACTACAAC AAGGCAATGT 
    GGACATATGT TTAATATATT CAGTCTCCTA AACTCAGGAA GAAATTAATA 
    TTTTTTTATA TTGTCTGTTA TTAGAAATGA GCATCATTTT GGAACGTTCA 
    GGTAAAATGT TATCCAGGAT TGTTTTACAA ATTGTCCTCA AGGAAAAGTT 
    TGGACTATTT TGGTTTGAAG CCCTACAAAA AATTTTGTAA TGCCAAAATT 
    TAGGCATGTT TTGGCACTAC CAATTTTTTT AGTTAAAATT GTCTAGTTAA 
    TGTTCCATTT GCTACCAATA TGATGAGAAT AAATTTCTAG AATGTGACCG 
    AATAGAGCAT GGCCAACAAC AATTATTTCA CTTCATTCCA AGCTATCCCT 
    ATTACTATTC AAGTTGCCAA AAGATTGGTA GAGCATATAT TGGCATCAAT 
    CCAAAACGGT CCTTTGTAAA CATTATTATG TGTATCGTCA ATGCAAATGA 
    GCAAATCTGC AGAAATTCTT AGAACATCAG GTGTTCATAC TTTGTAATAT 
    TAAATGATAG TTGTGAACTA AGGCTGTGTT TAGTTCACAT CAAAATTAGA 
    AGTTTGGTTG AAATTGAAAC GATGTGACGG AAAAGTTGGA AGTTTGTGTG 
    TGTAGGAAAG TTTTGATGTG ATGGAAAAGT TGGAAGTTTG AAGAATTATT 
    TTGAAACTAA ACATGACGCA AATAAATTGT AGCAAAATCC TTAATCATCC 
    AGGATATTCT TTGGATTCTA TTTAATGTAA GTTGGCATAA TAGTTCAACA 
    AATCGATTCT ATCACCATGG AAAAAAATGT GTGTTTGGTT CACAGGGCAT 
    TCTTGCATTT TATGGCTTTC CAATTCCTAC AATCTCCAAA GAGGCATCAG 
    AAAATCATCC ATCATCAATA CCAAAGGGTG TGCTGTTCGT GCTAAAAACA 
    TTGCCGGTCA GATTTCACAT GATATATCAC CAGTATTGAG TAAAATAATG 
    ATTCTCACAA ATCTAAACAT TTATATCAGG TTAATGCAAA GTGCATAGTA 
    GATGGTGATG GCTTTACTGC TTATGTCGAC ACACTGGATC CTATAGAACT 
    GCGTCAGGAT TGCAATGCAA GCTGTCAATC CCGTAACTCT GAGAAGCAAA 
    AATTGTGGGA CAAAACAGCA GCTGATCTAC AAATAAGTCT CGAAAATACT 
    GGACAAAAGA AAATGTTCTT TGGGGGCCGT GAGATCCTCG CAAGAAAATA 
    CGAAATAAGA CTGAGGGGCA TTGATGCACC GGAGATAGGC ATGCAGTATG 
    GAAAGGAGTC GCAGGATGCA CTGGTGAAAC TGATCGCTAG GAAGTGTGTC 
    ACGCTTCATG TTTATGGGCA GGACCAATTT AAGCGCTTCG TCTGTGATAT 
    CCATTGTGGT GGTGTGTTCA TCCAGGAGCA AATGCTGGTG AATGGTCATG 
    CCTGGCACTT CAAGAACTAT GACAAACGGC CACAATTTGC AAAGTGGGAA 
    AAAATGGCAC GGGATGCACG TCAAGGGCTT TGGGCATATG ATAACCTTGA 
    GAAGCCATGG GAATGGAGAA AGAACAAGAG GAAGGCATCG CGACATCACA 
    ATTCAGATGT ACGTTGATGG ACTCTGGTCA CTTGGATGAT GATCTTATCT 
    GAAATGACAT AATTTGGAAT TGGATCTATG GTTACTAGAC AGTTAGCCCC 
    AGTTGAGTAT GTATAAAAGT ATGATGTACT TTGTATATAG TAAGATTATT 
    AATCTCGATC TGTATTATTT ATAAACTAAT ATTTGAGTGA AGAATGTGTA 
    GATGAATTAT GATATGATAC CGCTTTTCAA TTAAAGCGGT G

    Gene models with high sequence identity

    1. AT2G40410.2 [+] show detail - Staphylococcal nuclease homologue
      E-value: 1e-50; Score: 40.80

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Staphylococcal nuclease (SNase-like), OB-fold 2.3e-24
    HMMSmart Staphylococcal nuclease (SNase-like) 7.5e-14
    ProfileScan Staphylococcal nuclease (SNase-like) 23.021
    Gene3D Staphylococcal nuclease (SNase-like) 1.5e-21
    HMMPfam Staphylococcal nuclease (SNase-like) 2.1e-18

    See the detailed result >

    AT2G40410.2

    Model type
    Protein coding
    Short Description
    Staphylococcal nuclease homologue
    Computational Description
    Staphylococcal nuclease homologue; FUNCTIONS IN: hydrolase activity, acting on ester bonds, nuclease activity, nucleic acid binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Staphylococcal nuclease (SNase-like) (InterPro:IPR006021), Staphylococcal nuclease (SNase-like), OB-fold (InterPro:IPR016071); BEST Arabidopsis thaliana protein match is: Ca-2+ dependent nuclease (TAIR:AT3G56170.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR