K17531

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17531

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17531

Determination of introduced cDNA(s)

  • J023050K06 - Rice Full-length cDNAs - Original: J023050K06

    full reading [+] show sequence

    Nucleotide sequence: J023050K06 - full reading 
    GGCCTCGTCA CCTCACCTCG GCATCACCCA GGTGGGAGGG GGTCCGCCTT 
    GACTTTTCGT GTTCGGGTTT GGGTTTGAGT GCCGCATCTG CAAGCTTGTG 
    CGAGGGGGGA ATCTCTCTTC CTTGCTGTGG TGGCGGCGGG CGGGAGGGCG 
    GCGTTGATTT CGTTGGGGTT TGCGTTGCGT GCGGAGGACG GGGTTGTGTT 
    TGTGTGTGTG TTTGTGCTGA TTTGGGCATT GGTGTTGGTG GTGGAGGAGG 
    ATGGGGAACT GCGTGGCGAG GAGCGGGACG GCGGTGGATG CGGGTGGTGA 
    TGGAGGGGAG GATGGGAAGA GGCGGAGGAG GAGGTGGAAG GCGCCGCGGG 
    AAGATCAGCT CGGGATGGTG CCCGGCCGGA TCTTCTCCAA CGACGGCCGC 
    AGCCGGACGG CGACGGTGTA CACGCAGCAA GGGCGCAAGG GGATCAACCA 
    GGACGCCATG CTCGTCTGGG ATGGGTTCGG CGGCGAGGAC GACGGCGTGC 
    TGTGCGGGGT GTTCGACGGG CACGGGCCGC ACGGGCACGT GGTGGCGCGG 
    AGGGTCCGCG ACTCGCTGCC GCTGAGGCTC ATGTCCGCGG CGCGCGACAG 
    CGGGGCGGAC ATGCCGGCCG CCGCATGGAG GAAGGCCTTC GCGCGCGCCT 
    ACAAGGCCAT GGACAAGGAC CTCCGGTCGC ACCCTTCCCT CGATTGCTTC 
    TGCAGCGGAA GCACTGCCGT CACCGTCCTC AAGCTCGGCT CGGATCTCTA 
    CATGGCCAAC ATTGGGGACT CGCGCGCCGT GCTCGGCTCC AGGGAGGCCA 
    CCGGCGGCGG CATGGTCGCC GTGCAGCTCA CCGTTGATCT CAAGCCGGAT 
    GTCCCCAGCG AAGCGGAGAG GATCAAGAAG TGCAGGGGCA GGGTGTTCGC 
    GCTGCAGGAC GAGCCGGAGG TGCCAAGGGT CTGGCTGCCG TTCGACGACG 
    CGCCGGGCCT CGCGATGGCG CGAGCGTTCG GGGACTTCTG CCTGAAAGAT 
    TACGGGGTCA TCTCGGTGCC GGAATTCTTC CACTGGTCTC TCACAGAAAA 
    GGACCAGTTC GTCATTCTTG CATCGGATGG GGTATGGGAT GTCCTCAGCA 
    ATCAAGAGGC TGTTGATATA GTGTCCGCGT CCCCAAGCAG ATCAAAGGCT 
    GCAAAATCCC TTGTTGAGGC AGCCACTCGT GAATGGAAAA CCAAATATCC 
    AACATCCAAA ATCGATGATT GCGCGGTTGT TTGCTTATAT TTGGATGGAA 
    AAATGGACCA TGAGCGTGAC TCAACTGCCT CATTGGACAA CATCAGTATT 
    GAAGAGGGTT CAGTTGCAGA TCCTAATGAA CCTCAGGAGC AGGAGCCCAC 
    CTTAACTCGG AATTTCACAG TTAGGACAGT TGCAGGCAGC ACGCAAGAGG 
    AGACCTTAGC AGGGGTGGAT GCGAGGATTG CTGGTGTAGC GAACGACCAA 
    AATTGGTCAG GTCTCGATGG AGTGACACGG GTAAACTCAC TTGTTCAGCT 
    TCCTAGGTTT TCTGAAGAGA GGGCAATTGG CCG

    Gene models with high sequence identity

    1. AT4G03415.2 [+] show detail - Protein phosphatase 2C family protein
      E-value: 7e-125; Score: 444.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein phosphatase 2C-related 6.8e-64
    HMMPfam Protein phosphatase 2C, N-terminal 3.2e-42
    Gene3D Protein phosphatase 2C-related 5.3e-62
    HMMPanther PROTEIN PHOSPHATASE 2C DELTA 5.4e-127
    HMMPanther Protein phosphatase 2C 5.4e-127
    HMMSmart Protein phosphatase 2C-related 6.2e-67

    See the detailed result >

    AT4G03415.2

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Computational Description
    Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT1G03590.1).
    Link
    InterPro Scan - TAIR