K17544

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17544

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17544

Determination of introduced cDNA(s)

  • J033130G01 - Rice Full-length cDNAs - Original: J033130G01

    full reading [+] show sequence

    Nucleotide sequence: J033130G01 - full reading 
    GACTCCTCCT CGGCCGCCTC GTCGTCTCCG GCGACCTCCG CCGGAGCCCC 
    GCCCACCTCC GCCGCATCGT CCCGCTCCTC CCTTCCCACC CCCACCTCGC 
    CGCCGCCCTG TGCGCCGTCC ATTTCCCGCT CTTCCCCTCC TCCTCCGTCA 
    CCTTCCTCCA CAACATCCTC ATCCGCGCCT CCGCCTCCTC CGCGTCCCCG 
    CGCCTCTCCT TCGCCGCCTT CTCCTCCCTC CTCCGGTGCG GGCTCGTCCC 
    TGACAGGTTC ACCTTGCCGC CCCTCCTCGG TTCGGCGGGT AAGCTCCCGG 
    CCTTCCCGCG CACGGGCGCG CAGGTGCACG CGCAGGCCGT CCGGCGCGGG 
    TTCTTGGCGG ATGTCTTCGT CGTCAACGCG CTCCTCGCGA TGTACGGCGC 
    GCTCCGGGAC GCGGCGTCGA TGCGGGAGGT GTTCGGGTCG TGCGCCGGGG 
    TCGCGGACGT GGTGTCGTGG AACACGGTGA TCGGTGGCTA CGTGAAGTGC 
    GGGGAGATGG AGAGTGCCAA GAGGGTGTTC GACGAAATGC CACGGAGGAA 
    TGGGGTGTCC TGGAGCACCA TGGTGGGGGG CTATGCCGCG GCCGGGGAGC 
    TGGATGTGGC AAGGGAGATG TTCGATCGGA TGCCAGCTAT TGGGAGGAAT 
    GTCGTGACAT GGAACTCCAT GGTGACAGGA TTCGCGCGCC ACGGGCTGCT 
    GCCGTTAGCG AGGAAGATGT TCGATGAGAT GCCAGTCAGG AATCTGGTGT 
    CATGGAATGC AATGCTCCGG GGTTATTCAG TGAACAGCGA CATGGATGGC 
    GCGAGGGAGT TGTTCGATGT CATGCCAGAG AAGGATGTGG TTTCCTGGAC 
    ATGCATGATT TCAGGGTATG CTCAGGCTGG ACGCTATCAG GATACCCTTG 
    AGCTGTTTCG CGCAATGCAG ACTGAGAGCA ATGTACAGCC GAATGAGGTG 
    ACCATGGTGA GTGTGCTTTC AGCATGCGCA AATTTAACAG CACTGGAAGA 
    AGGAAGATGG GTCCATGCCT TCATCGACAA GCACAAAATG GTGCTCAACA 
    ACGAGTACAA TCTTGGTGCT GCTCTTATTG ACATGTATGC CAAGTGCGGG 
    AGAACTGACA TTGCTGTCAA AATTTTCAAC TCCCTGGACC GAAAGAACGT 
    CTCGGCCTGG AACGCGCTCA TCACCAGGTT GGCAATGAAC GGCAATGCTC 
    GGGATTCCGT AGACGCATTC GAACAGATGA AGAGAACGGG TGAAAAGCCG 
    AACGACATAA CGTTTGTCGG TGTGCTCACA GCTTGTTCCC ACGGTGGGCT 
    GGTGGATGAA GGTCGACGGT GCTTCCAGAG CATGGCGTCT ACCTGCGGAG 
    TGCAGCCGGA GGTGAAGCAC TATGGTTGCA TGGTTGACAT GTTAGGCCGA 
    GCAGGGCTTC TTGAAGAGGC AGAGGAGTTG ATCCGGAGCA TGCCGATGGC 
    ACCCGATGTC ATGGTTTTCG GCGCTCTACT GGGTGCCTGT CGAATGCACA 
    AGAGATTTGA TGTGGCTGAA AGAGTTCAGA GTGAGATCCA TAGCCTCAAT 
    CTCAACGCCC AGCAGTCTGG CTGCCATGTT TTGATTTCTG ACATTTATGC 
    TGCTGCTGGT AAATGGTTCG ATGTTCTGGA GGCGAGGCAA GTTGTGCAGA 
    GGTCTGGCAT CAGGAAATGG ACACGATAGG TTTAAGATTC TTGTAGAAGC 
    CTGATATTGA CTTTACGCTT TTGAGCAATG GAAGTGGTGG CACTGGTGGG 
    TATATTGCTT AATGCTTACA AGTTATCGGA AATGTGGTT

    Gene models with high sequence identity

    1. AT2G29760.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 7e-91; Score: 332.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Pentatricopeptide repeat 1.2e-08
    HMMPfam Pentatricopeptide repeat 1.4e-05
    HMMPfam Pentatricopeptide repeat 5.6e-07
    HMMPfam Pentatricopeptide repeat 1.4e-06
    HMMPfam Pentatricopeptide repeat 1.7e-06
    HMMPfam Pentatricopeptide repeat 0.013
    HMMPfam Pentatricopeptide repeat 0.0055
    HMMPfam Pentatricopeptide repeat 0.00088
    Coil coiled-coil 0
    HMMTigr Pentatricopeptide repeat 0.17
    HMMTigr Pentatricopeptide repeat 0.0011
    HMMTigr Pentatricopeptide repeat 0.026
    HMMTigr Pentatricopeptide repeat 0.014
    HMMTigr Pentatricopeptide repeat 0.059
    HMMTigr Pentatricopeptide repeat 4.2e-07
    HMMTigr Pentatricopeptide repeat 1.2e-05
    HMMTigr Pentatricopeptide repeat 0.02
    HMMTigr Pentatricopeptide repeat 0.0029
    HMMTigr Pentatricopeptide repeat 0.5
    HMMPanther SELENIUM-BINDING PROTEIN 8.9e-185
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 8.9e-185
    superfamily TPR-like 1.1e-31
    ProfileScan Pentatricopeptide repeat 6.336
    ProfileScan Pentatricopeptide repeat 11.904
    ProfileScan Pentatricopeptide repeat 11.148
    ProfileScan Pentatricopeptide repeat 6.007
    ProfileScan Pentatricopeptide repeat 10.567
    ProfileScan Pentatricopeptide repeat 6.489
    ProfileScan Pentatricopeptide repeat 5.81
    ProfileScan Pentatricopeptide repeat 10.589
    ProfileScan Pentatricopeptide repeat 6.182
    ProfileScan Pentatricopeptide repeat 7.837
    ProfileScan Pentatricopeptide repeat 7.322
    ProfileScan Pentatricopeptide repeat 6.741

    See the detailed result >

    AT2G29760.1

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Curator Summary
    Encodes a chloroplast RNA editing factor.
    Computational Description
    ORGANELLE TRANSCRIPT PROCESSING 81 (OTP81); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G08070.1); Has 39055 Blast hits to 14294 proteins in 286 species: Archae - 1; Bacteria - 14; Metazoa - 160; Fungi - 158; Plants - 37962; Viruses - 2; Other Eukaryotes - 758 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR