K17601

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17601

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17601

Determination of introduced cDNA(s)

  • J033089D21 - Rice Full-length cDNAs - Original: J033089D21

    full reading [+] show sequence

    Nucleotide sequence: J033089D21 - full reading 
    GCCTTTTGCT CCTCTCGCCG TTTTGGTCGG GGTTTTAGCG AGCGCGTGGG 
    AGGCCGGAGG CGACGACGAC GACCGCGCCG CCGTCGGAGA AGAAGGCCGC 
    GGAAGCACCA GTACCAGCAC CCGTATATGT CTTCTAGCCC CTTCTCCGAT 
    CTGGTGGTAG TCGTGCTCCT CGTCTGCGCC GTCGTCGCCG CAGCCGTCCT 
    CCTCCCCCTC GTCTGCGCCC GCCGATCTAT GCACCAGAGG CTCCACGGCT 
    GGAACAAGTC CACGTCGATG CTCAGGGACG GGTTCGGGGT CAAGTATTCC 
    GGGTTCCTCC ACATAAGGCC GTGTGGTTTC TGTCGAGGAG ATTGACGGAT 
    TCGATCGATT CGTGTTCGTC TCCGTCAAAT TTTTGCACAA GAGAAAAAAA 
    AGTTTCCCCC TTTTAGAGTT TTTCCCCTTC AGTTTTGTCA GTTTTGGTGA 
    GGAATTTTAG AGTTCTTTTC CGGCAAGAGT TAGAAGAAGA GAGAAATGGC 
    CCCTTCCAAG CAGCAGCAGA TGCTCCTCAA GAAGGTGATG GCGAAGAAGC 
    CCAAGACGAA GAGGCTATCC GGGTTTGGCC TTAAACCCTC TGCTGCTTTC 
    TCCAGGCCCC ATGTGCCGTC GGCGGCGGCC TCCCTGCAGC CAAGCCGTCG 
    CGTCCGCGTC GTGTTCGAGG ACCCTGACGC GACGGACTCC GACTCTGACG 
    ACGACGAGGA CGCCGGCGCC GCCTCAAAGA AGCGCTACTT TGAGCTCTTC 
    ATTGGCAAGC CAGCTTCGTC GACGAAGCAG GCCTCTCCGG CGTCCACCGT 
    CGCTGCCTAC GCCAACATCG GCAAGGTTGG GAGCACCTGC TACCGTGGTG 
    TGCGCCTCCG GAAGTGGGGC AAGTGGGCGG CGGAGATCCG CAACCCCTTC 
    ACCGGCCATA GGGCGTGGCT TGGCACCTTT GACACTGCTG ATGCGGCCTC 
    CGCCGCCTAC CAGTCTGCCT CCCGCAACTT CGCCGAAGAG AAGCGCCGCC 
    GTGGTGTGGC CTCCTCTGCC TCACCTGCTA GTTCGGCGAC CCCTACTCCG 
    ACTGCGTCCT CGTCGTCCTC GACTTCTGCC GCGCCATTCG CCCACCCTTC 
    GCCGTCGTCT GTGCTCGAAG CCACCAAGCC AGCTCCAAAG CCAGAGTCGC 
    CGCCGCTGCC GGAGCAAGCT GCAACTCCCC TCCTGGTGGA GGCTACCAAC 
    GAGACCGCCG AGCTGCCGGA TGACCCAGAG TTCTACAAGG ATATACTGCG 
    CGGTCTACAG CTGCCGGACA TTGACCCGAT GGATTTCCGA GCTGGGCTGG 
    ATGCTCTGGA TATCTCCGAT GTGCCGGCTT ACATGAATGG CGAACAAGAC 
    GTACTCTTCA CTGAGGACAT GCTGCTTGGA GACTTCGCTG AAGAAGATGA 
    CCTCGACCTC GACGACATCG GTGATGACTT CTGCGAGGAT TTCCCAGAGA 
    TACCCAGCGG CTACGACTTC GGCCGTGGTG ATATGTTCCG GCAGGTGGAT 
    TTCTGCGTGT GAATTAAGAG CTTGCTAAAG TTATTCATGT TGGTGTGATG 
    GGCCTGTGAG TGTGGGTGCT TGGGAGGAGA TTTCTTGGGT TTTTTCCCCG 
    AGCAAAATCA ATCTGCTCGT GCCCTTGAGA TTTCAGTTCC GCCCATAAGA 
    ACTCCAACGC ACATTTAGCA TTCGGAGAGT AATTTTGTTA GGTTAAAAGT 
    ATGGTAAGTT ATAGGTGGTA TGTTATGTTT TTCTTTTTCT TTTCTCAATG 
    TTATCTGGTA CCTAAGTTTG TC

    Gene models with high sequence identity

    1. AT1G12980.1 [+] show detail - Integrase-type DNA-binding superfamily protein
      E-value: 2e-09; Score: 61.60

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 17.306
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.1e-08
    FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 2.1e-08
    Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.8e-14
    HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 1.8e-14
    superfamily DNA-binding, integrase-type 7.4e-16
    HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.4e-11

    See the detailed result >

    AT1G12980.1

    Model type
    Protein coding
    Short Description
    Integrase-type DNA-binding superfamily protein
    Curator Summary
    Encodes an AP2/ERF protein, is expressed in a subdomain of meristem stem cells, in lateral organ anlagen, and transiently in the distal domain of organ primordia. It is a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ESR1). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Can confer cytokinin-independent shoot formation and causes severe meristem defects when overexpressed in Arabidopsis root explants. Involved in controlling embryogenesis and embryo patterning by interaction with PHAVOLUTA.
    Computational Description
    ENHANCER OF SHOOT REGENERATION 1 (ESR1); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DORNROSCHEN-like (TAIR:AT1G24590.1); Has 5974 Blast hits to 5668 proteins in 251 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 2; Plants - 5957; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR