K17623

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17623

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17623

Determination of introduced cDNA(s)

  • J013105J09 - Rice Full-length cDNAs - Original: J013105J09

    full reading [+] show sequence

    Nucleotide sequence: J013105J09 - full reading 
    GACTGACTCG ACTCGAGCAC AATCTAATCT GGGCTTCGAG TTGACGCGCA 
    CGCGCTCTCC CCTCGCTCCC CCTCCCACGC CAAAACCTCC CTCCTCCTCC 
    CCCTCGCCGC GGCGCCAACG CAGATCGCCT CCCAATCCCT ATCCGATCGA 
    GACCGCCTCC CCTTTCCGGC TAGTTCGCCG CCGCCGCCGA CGACGACGAT 
    TGCGATTGGC GATGGGGCAC AGCGCGAGGA AGAAGAAGAA GAAGAAGGGC 
    GGGGGCGGGC GGAAGGCGGC CAAGGACCAC GGGGGGCAGC TCGAGGGCGA 
    CCAGGCCGCC CTCGCCGACG AGCTCACGGC ACTGGGTTCA ATTTTCCTTG 
    AGGACTTCAA AGTGACATCA GAATCACCTC AGACCCGTTT TACTATATGT 
    ATCAGGCCTT ATTCTGATGG CATGGGCTTT GGAGATTCGA ATGTTTCAGC 
    GACTCTTGAT GTAACGTGTT TTGCTGGTTA CCCCCACAAG TGCCCAAAGT 
    TGCGGGTTCT ACCTGAAAAG ACCTTATCTA GAGAAGATGC TAATCGGTTG 
    CTTTCCCTTC TTGTTGATCA GGCAAACATT TATTCCCGAG AAGGGCGTGT 
    TATGATATTC AATTTGGTAG AGGCTGCCCA AGAGTTCTTG TCAGAAATTG 
    CTCCAGCTAA TGATTCAACA AGCATGGCTC CTTGGTTGGG TTCAGGCAAA 
    GTACAGCAAA CAACTGATGT AGACGTGAAA GTTAAGCTTG ACAATGGTTC 
    TTACCATGGA GTTGCTTACA TGCATAACTC ATTTGACCTG TATAGTCAAT 
    TATATGATGG AGGTAGTTGG AGCATGCAAG GTCCAGATCC AGCAACTGAT 
    AGTGCTGGGA AAATTGTTGG TTCTCAAGTC AAATCTAATC TTAAAAGCAA 
    GAGGAAGACA ATTATTGAAA AATCCCGTGT TTCTTCTGAT GAGGTTAATG 
    TTGCAAAGGG TTTATTACCG GATAATGCTG GTCAGAAAAA TATAATGAAG 
    CATGATGTTA TTCGGGAGAC AGTTCCCAGT TTGCATGTCG TTGCAGAGGA 
    AACTGAAAAT GACAGCAAAA CTGTTTCTAC GAGCAACAGA GAAAATACAT 
    CAGGTACTCC AGAGAGGAGT TTTAGCAGTG TGCATCAACT TGAGGACTCT 
    GATCTTTCAG ACGAAGATTG GAATGATGAA GATTCTGGTT CAGGCTCTGG 
    ATTTTCAAAT ACCCCATCTT TTGACATGTT TGATGATGCT TCACGGAAT

    Gene models with high sequence identity

    1. AT3G59410.1 [+] show detail - protein kinase family protein
      E-value: 1e-41; Score: 167.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RWD 2.2e-15
    HMMPanther EIF2ALPHA KINASE 4.4e-34
    HMMPanther EUKARYOTIC TRANSLATION INITIATION FACTOR 2-AL 4.4e-34
    ProfileScan RWD 20.446
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 1.8e-23
    superfamily Ubiquitin-conjugating enzyme/RWD-like 3.2e-21
    HMMSmart RWD 1.2e-22

    See the detailed result >

    AT3G59410.1

    Model type
    Protein coding
    Short Description
    protein kinase family protein
    Computational Description
    GCN2; FUNCTIONS IN: protein tyrosine kinase activity, protein kinase activity, aminoacyl-tRNA ligase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, translation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Anticodon-binding (InterPro:IPR004154), Tyrosine-protein kinase, active site (InterPro:IPR008266), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), RWD (InterPro:IPR006575); BEST Arabidopsis thaliana protein match is: Class II aaRS and biotin synthetases superfamily protein (TAIR:AT3G02760.1); Has 102900 Blast hits to 101457 proteins in 4494 species: Archae - 105; Bacteria - 12314; Metazoa - 36099; Fungi - 10698; Plants - 26119; Viruses - 326; Other Eukaryotes - 17239 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR