K17747

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17747

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17747

Determination of introduced cDNA(s)

  • J023139H09 - Rice Full-length cDNAs - Original: J023139H09

    full reading [+] show sequence

    Nucleotide sequence: J023139H09 - full reading 
    GGTTGATGGT AGTAGACGGC TTCAGAATTT GAGTGCAGGA CTGTTAACAT 
    TAGGGAGCTT CTGTACACGA CGAAGCATGT ATCTCCCCAT CTGAGACAGA 
    CAATTCTTCG AGTGCGAAGC ATCCGTGGCA CTTCTATGTG CACGATTCCT 
    CGAGTGCTAC AAACGGTTTC GCTACCAACA ACGGCTCGTG TTCTTCTGAA 
    GGAATCTGAC GTGACGTGCA GCGGCAGGGC ACTTGACTGA CCGATGAGTT 
    CGTTGCTTTC CCGGCCCGTT TGCCACTCCT GAACAATCGT AGCGAGGGGA 
    GGGGAAAAAG ACGACCCCGA ATCGCCTTAA GACAGTGGGT GTTCTTGTCG 
    TGCGCTTCAC CGTTTGTCTT GTTGGACCCG GAGACCCCAC ATATCCAGAT 
    CTGCAAGCTT CCTCCTCCTC CTTCCTCCTG ATCCTTTAGC TTCCTATATA 
    CGATTCCACC ATCGAAGGCC AGGGCCCAGA CTTGCTTGCC GCAGGTTACT 
    GATCCACCGA AGGAGGGAGG CGCCCGCCCG CCGCCATGGC CGAGGTGACG 
    GTGGTCCGTG CGGAGCGCGA GGAGGAGTCC ACCCTGGAGC AGGGTCTCCT 
    CGCCATCCCG GAGGAATCCA ACCAACTTAC ATACACTGGA GATGGATCTG 
    TCGACTTTTC TGGGAATCCT GTTGTGAAGG AGAGAACTGG TAGATGGAGG 
    GCATGCCCAT TTATCTTAGG TAATGAGTGC TGTGAGCGGT TGGCCTATTA 
    TGGAATCTCC ACAAACCTTG TTACATACTT GACAAAGAAA CTGCATGATG 
    GTAATGCTTC TGCTGCTAGC AATGTGACTG CATGGCAGGG AACTTGCTAC 
    TTAACTCCCC TTATTGGAGC TGTACTGGCT GATGCATACT GGGGAAGGTA 
    TTGGACTATT GCAACATTCT CCACGATATA CTTCATTGGG ATGGCTGTAC 
    TGACTCTTTC AGCATCAGTT CCTACATTCA TGCCTCCACC TTGCGAAGGG 
    TCCTTTTGCC CACCAGCAAA TCCATTGCAG TATACTGTCT TTTTTCTTGG 
    ACTTTACCTA ATTGCTCTTG GTACTGGTGG TATTAAGCCC TGTGTCTCAT 
    CCTTTGGAGC AGATCAATTT GATGATACAG ACCCAGTTGA GCGAATCCAG 
    AAGGGATCTT TCTTTAACTG GTTCTATTTC TCAATAAACA TTGGTGCTCT 
    CATATCAAGC AGTTTTCTGG TTTGGGTGCA AGACAATATA GGATGGGGAA 
    TAGGCTTTGG CATTCCAACA ATTTTCATGG GGCTGGCCAT CATAAGTTTC 
    TTCTCTGGAA CATCACTTTA TAGATTCCAA AAGCCAGGCG GCAGTCCTAT 
    TACACGAGTA TGCCAGGTGG TTGTTGCCTC CTTTCGCAAG TGGAACGTAC 
    ATGTTCCAGA GGATAGCTCT CGCTTGTATG AGTTGCCTGA TGGGGCTTCA 
    GCAATTGAAG GGAGTCGGCA ATTGGAGCAC ACCGATGAAC TCAGATGTCT 
    GGACAAAGCT GCTACAATTA CTGATCTTGA TGTGAAAGCA GATAGCTTTA 
    CAAACCCATG GCGAATATGC ACTGTGACTC AGGTGGAAGA ACTGAAGATA 
    TTGGTAAGGA TGTTCCCTGT CTGGGCAACG ACTATTGTGT TTTCTGCTGT 
    CTATGCTCAG ATGTCCACCA TGTTTGTTGA GCAAGGGATG ATGCTTGATA 
    CATCAGTAGG TCCATTCAAG ATTCCTCCAG CATCTCTATC TACCTTTGAT 
    GTGGTAAGTG TCATTATATG GGTCCCCCTC TATGATAGTA TCTTGGTTCC 
    AATAGCTAGG AGGTTCACTG GCAACCCGAG GGGCTTTACA GAGTTACAGA 
    GGATGGGGAT TGGTTGGGTA ATCTCAATCT TTTCGATGGC GGCAGCTGCA 
    GTTCTTGAGA TTAAAAGGTT GGACATTGCA AGGGCTGAAC ATTTGGTGGA 
    TCAAAATGTT CCAGTACCAC TGAACATCTG CTGGCAAATT CCTCAATATT 
    TCTTGGTTGG TGCCTCAGAG GTCTTCACAT TTGTCGGGTC ACTTGAGTTC 
    TTCTATGATC AATCACCGGA TGCCATGAGG AGCCTCTGCA GCGCACTGCA 
    GCTTGTCACA ACAGCTCTTG GGAATTATCT CAGTGCATTC ATTTTGACAT 
    TGGTTGCGTA CTTCACAACA AGAGGAGGAA ATCCTGGATG GATTCCTGAT 
    AACTTGAATC AAGGTCACCT AGATTATTTC TTCTGGCTTC TTGCTGGGCT 
    CAGTTTTCTG AACTTTGTGA TATATGTCAT CTGCGCAAAC AAATACAAAA 
    GCAAGAAAGC AGCTTGAGCT AATCAGGAGT TAAAAGACTG TCGTCATGGG 
    AATTTCACTT CAAAATTCTG TATATATGTG CACAAAGTAC ATGTTGAAGC 
    AGCGACCGTA ACAAGAGAAC TTTAACCATC CTGTACTCTG TATTTGATGC 
    TACTATACAT TTTATACTTT TTGTTCTGTA GATATTAATT TATTGAAGCT 
    ACTTGTGGAA TGTAGCTTTG CTTCC

    Gene models with high sequence identity

    1. AT2G02040.1 [+] show detail - peptide transporter 2
      E-value: 0; Score: 838.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oligopeptide transporter 1e-110
    superfamily Major facilitator superfamily, general substrate transporter 1.3e-27
    PatternScan PTR2 family proton/oligopeptide symporter, conserved site 0
    PatternScan PTR2 family proton/oligopeptide symporter, conserved site 0
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0
    HMMPanther OLIGOPEPTIDE TRANSPORTER-RELATED 0

    See the detailed result >

    AT2G02040.1

    Model type
    Protein coding
    Short Description
    peptide transporter 2
    Curator Summary
    Encodes a di- and tri-peptide transporter that recognizes a variety of different amino acid combinations. Expression of the transcripts for this gene can be detected in the embryo through in situ hybridization. This protein does not have nitrate transporter activity based on oocyte transport assays.
    Computational Description
    peptide transporter 2 (PTR2); FUNCTIONS IN: dipeptide transporter activity, high affinity oligopeptide transporter activity, tripeptide transporter activity, peptide transporter activity, transporter activity; INVOLVED IN: dipeptide transport, tripeptide transport, peptide transport; LOCATED IN: vacuolar membrane, plasma membrane, vacuole, plant-type vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: PTR2 family proton/oligopeptide symporter, conserved site (InterPro:IPR018456), Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G62200.1); Has 8080 Blast hits to 7668 proteins in 1494 species: Archae - 0; Bacteria - 3960; Metazoa - 799; Fungi - 488; Plants - 2224; Viruses - 0; Other Eukaryotes - 609 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR