K17945

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K17945

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • decreased size (PATO:0000587)
    (Seed::Shape::small)
  • decreased length (PATO:0000574)
    (Seed::Shape::short)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K17945

Determination of introduced cDNA(s)

  • J033039M12 - Rice Full-length cDNAs - Original: J033039M12

    full reading [+] show sequence

    Nucleotide sequence: J033039M12 - full reading 
    GGAACACTCC GGACTCCTCC GCCGCCGCGT CCCCCGTCTC TCTCGACGAC 
    GCCTCGACTG ACGAGAGGAG GAGACCTCTC CCTCCCATAA AAGGGGGAGG 
    ACGAGGGCGA GGAAGAGGAG GAGGCTTGTG CTGCTTCGTC TTTTCCCGCC 
    GCCGCGCACC GACGCCTGAA CCAACTGTCT CGCCGTGAAC CCTCGCCGGA 
    GTTGGTAGAG GAGGAGATGG CCAAGGACGG AGGAGGGCCC GACTGGAACG 
    GCCTGCTCAA GTGGAGCCTC GCCCATGGCG ACGGCACCGC CAAGCCGCGC 
    TCGCTCAGTG GGGAGGACAA GAAATGGTTT ATGGAGGCAA TGCAAGCTAA 
    TACAATGGAT GTTGTTAAGA GGATGAAGGA GATCACCCAA GTGATGAAAA 
    CTCCAGATGA TGTACTACAG TCTCAAGGTG TGACTCCAGA GAACATCGAA 
    GATATGTTGG ATGAGTTACA GGAGCATGTT GAATCCATTG ACATGGCAAA 
    TGATCTGCAC TCTATTGGTG GATTAGATCC CCTACTTGGT TACTTGAAAA 
    ATTCACATGC TGGCATCAGA GCAAAGGCTG CAGAGGTTGT GAGCACGATT 
    GTGCAAAATA ACCCCAAGAG CCAGCAACTT GTCATGGAAT CTAATGGCCT 
    GGAGCCACTG TTGACAAACT TCAGTTCCGA TGCAAGCACG AATTCACGCA 
    CAAAAGCTCT TGGAGCAATA TCATCTCTAA TTCGTCATAA CCAGCCAGGA 
    GTTGCTGCAT TCCGCCTGGG AAATGGCTAC TCTGCACTGA GAGACGCTCT 
    TGGTTCTGAT GATGCTAGAC TTCAGAGGAA AGCTCTCCAT CTCCTACAGT 
    ACCTACTGCA CGACAACAAG GCTGATAGGA GTGTTGCTAC AGAGCTTGGT 
    CTTCCAAAGC TGATGATGCA CCTGGCATCG AGTGATGATT CTGGAGTCCG 
    GGAGGCTGCC TTAGGTGGTC TTCTCGAGCT GGCGCGGGAC AATACATCCG 
    GTGCTGGAAA CGTGCTACCT GACCAAGACA AGCTGAAAGA TGTCCTTAAG 
    AGCCGAATCG AAGGCATCAG CACAATGGAT GCCGACGATC TCTCCGCACA 
    TCGTGAGGAG CGACAGCTTG TGGACTCCCT CTGGAAGGAG TGTTACAACG 
    AGCCGTCGTC TCTCAGGGAG AAGGGTCTTG TTGTGCTTCC TGGAGAGGAT 
    GCACCTCAAC AGCCACCACC GGATGTCGTT GGCAGCATGT TTGAGCCGCC 
    GCTTCGCGCT TGGGCAGCAT CAAGGCCACC TCCCAAAGAA GATTCAGAGT 
    CTGAGAGCGC CAAGAAGGAT CCACCATTGC TGCTAGGCCC TGGACCGTCT 
    TCCTAGACTT GTTGGGATTG CTTAGTTTTT CGCTTATGCA ATTCTCTAGA 
    CTTAACCTTA AAAAGATCCT ACATATTTGC AATCTGCTGA AATTCTCTGC 
    ATTTTAATCC TGTCCTGAGC TCTTGGATGT ATTGAGGTTT TTGGATATCT 
    GTAATCTGTG ATGCTATTAA AATACGAAGA TGAAAGATAC TTATCTCTTC 
    CACG

    Gene models with high sequence identity

    1. AT3G09350.1 [+] show detail - Fes1A
      E-value: 1e-130; Score: 463.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Armadillo-like helical 4.4e-19
    HMMPfam Nucleotide exchange factor Fes1 5.1e-06
    Coil coiled-coil 0
    superfamily Armadillo-type fold 1.1e-32
    HMMPanther HSP70 BINDING PROTEIN HSPBP-RELATED 3.1e-203
    HMMPanther PROTEIN FOLDING REGULATOR 3.1e-203

    See the detailed result >

    AT3G09350.1

    Model type
    Protein coding
    Short Description
    Fes1A
    Curator Summary
    Encodes one of the Arabidopsis orthologs of the human Hsp70-binding protein 1 (HspBP-1) and yeast Fes1p: Fes1A (AT3G09350), Fes1B (AT3G53800), Fes1C (AT5G02150). Fes1A is cytosolic and associates with cytosolic Hsp70. Mutants showed increased heat-sensitive phenotype suggestion the involvement of Fes1A in acquired thermotolerance. Does not have nucleotide exchange factor activity in vitro.
    Computational Description
    Fes1A (Fes1A); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: Fes1C (TAIR:AT5G02150.1); Has 622 Blast hits to 617 proteins in 204 species: Archae - 0; Bacteria - 0; Metazoa - 202; Fungi - 158; Plants - 182; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR