K18003

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18003

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18003

Determination of introduced cDNA(s)

  • J013159G03 - Rice Full-length cDNAs - Original: J013159G03

    full reading [+] show sequence

    Nucleotide sequence: J013159G03 - full reading 
    GCTCTCACAC ACACACGCAC GCACCGCGAG CGCAAGCCGG CAACCACCGT 
    CCGCGAAAAC CCTAGCCGCG TCGGCGGCTT CGGGGGGAGC GTCGATGTCG 
    GACCCCTTCT ACCCGCACGG CCACGGCGGC GCCGCGGGCG GCGAGGGCGC 
    GGCCGCGGCG GGGTACTCGT CCTACGAGGT CGACCTCATC GCGGCCCGCT 
    ACGGCGGCCG CCCGCTCGCC AACCCTTCCT CGGCCGCCGC CGACCTCGAC 
    GCGCGGCTGG CCGGCGCGAG GCGATCCATG GGAGTTCTCT ATCATCAGCC 
    AATTATGGGA AGCCATAGTA CTGTTGAACA GATTGAGGCT TTGTATTCTT 
    CAAATACTAT GACCAAGCGC CCTAGGCTTG AAAGCAGCCT TCCTATATAT 
    CCACAGCGAC CGGGGGAAAA GGACTGTGCC TTCTATATGA TGACCCGAAC 
    CTGTAAATTC GGAGGTTCCT GCAAATTTGA CCATCCACAA TGGGTTCCAG 
    AGGGTGGGAT TCCAAATTGG AAAGAGCAGG CTGCAAATGT TGAAGAATCC 
    TATCCAGAAC AAGAAGGGGA ACCAGATTGT CCTTTTTTTA TGAAGACTGG 
    TAAATGCAAG TTTGGATCGA AATGCAAGTT CAATCATCCA AAGGAAAAGG 
    TTAATGCATT AGCGTCTGGA AATACCAATG ATAAGCATCT AATTGCTGAT 
    AGTTCTATCT TACCAGTGAG GCCTTCTGAG CCACTTTGTT CTTTTTATGC 
    AAAAACAGGC AAATGCAAAT TTCGTGCAAT GTGTAAGTTC AATCATCCCA 
    AGGATATTGA AATACCTTCA AGTCAAAATG AACCCGAAAG TGCAGTGACT 
    GTTGAAGGAG AAACGGATAT TGGTTCAGCA GCTGATTCAG TTTCAGCGAA 
    GATGCAAACT CCAGTTGCTG CTGCGCAAGA GTTTAACTCT AAAGGGCTGC 
    CTATGAGACC AGGTGAAGTT GATTGTCCTT TTTACATGAA GATGGGCAGT 
    TGCAAGTTCG GTTCTACTTG TCGATTCAAC CATCCTGATC GTCTAGTTTT 
    AAATTTTCCA CTTCCACTGG GTCAAACCAT TCTCCCTACT CCGGAATCCA 
    TGCTGCTAAA TTCATCTGCA AACTTCATGC AAGGCTTTGA TTTTCATGCG 
    GCACACATGC CTGTTGGACC TGGGCCAGTC ACCTATCCCC AGAGGCCTGG 
    AGCAACTGTT TGTGATTTCT ACATGAAGAC AGGATTTTGC AAGTTTGCTG 
    ACCGATGCAA GTTTCACCAC CCAATTGATC GTTCTGCTCC CGATCCCTCT 
    GCAAACTGGG AGCCTGCTGA GGAGTCTGTG CAGCTTACTC TTGCTGGCCT 
    ACCAAGAAGA GAGGATGCCG TGGTATGTGC CTTCTACATG AAGACTGGCG 
    TGTGCAAGTT TGGTATGCAG TGCAAGTTCG ACCACCCACC CCCTCAGGAG 
    GCTATCGCCA AGGTGTCGAA TTCAGGGAGC TGAGAAGAGA GACAAATATA 
    TTGACGCAAG GCCGAATTAA ATCCATGCCT TATTCATTCC TCGCATATGA 
    ATTAAACATG AAACCGCACT ACTTGGGTAG GTATGTCGTC TTTGTAGATC 
    TCTGTGGCAT CTGATGTATT CCCTGTTATT TAGTGGTTTT AGCTGATGCA 
    TTTTGAGTAT ATGCACCTTT CGGTTTGGGC GTTCATGTGC AGGTGACATC 
    ATATGCTATA GTATTTTTTT ATTG

    Gene models with high sequence identity

    1. AT3G12680.1 [+] show detail - floral homeotic protein (HUA1)
      E-value: 3e-118; Score: 422.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily CCCH zinc finger 8.9e-08
    superfamily CCCH zinc finger 5.4e-06
    superfamily CCCH zinc finger 9.8e-06
    superfamily CCCH zinc finger 0.00013
    superfamily CCCH zinc finger 0.00015
    superfamily CCCH zinc finger 0.00019
    HMMPfam Zinc finger, CCCH-type 1.7e-08
    HMMPfam Zinc finger, CCCH-type 1.9e-10
    HMMPfam Zinc finger, CCCH-type 1.9e-07
    HMMPfam Zinc finger, CCCH-type 2.2e-10
    HMMPfam Zinc finger, CCCH-type 1.6e-09
    HMMPfam Zinc finger, CCCH-type 2.1e-08
    HMMSmart Zinc finger, CCCH-type 0.0038
    HMMSmart Zinc finger, CCCH-type 8.8e-07
    HMMSmart Zinc finger, CCCH-type 8.5e-05
    HMMSmart Zinc finger, CCCH-type 6.8e-07
    HMMSmart Zinc finger, CCCH-type 2.1e-07
    HMMSmart Zinc finger, CCCH-type 5.4e-05
    ProfileScan Zinc finger, CCCH-type 12.615
    ProfileScan Zinc finger, CCCH-type 16.23
    ProfileScan Zinc finger, CCCH-type 14.267
    ProfileScan Zinc finger, CCCH-type 15.601
    ProfileScan Zinc finger, CCCH-type 14.859
    ProfileScan Zinc finger, CCCH-type 14.408

    See the detailed result >

    AT3G12680.1

    Model type
    Protein coding
    Short Description
    floral homeotic protein (HUA1)
    Curator Summary
    Member of the floral homeotic AGAMOUS pathway.
    Computational Description
    ENHANCER OF AG-4 1 (HUA1); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT2G47850.3); Has 2136 Blast hits to 795 proteins in 118 species: Archae - 0; Bacteria - 0; Metazoa - 325; Fungi - 89; Plants - 1572; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR