K18120

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18120

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18120

Determination of introduced cDNA(s)

  • J013066G20 - Rice Full-length cDNAs - Original: J013066G20

    full reading [+] show sequence

    Nucleotide sequence: J013066G20 - full reading 
    GGTGGCTGAG CACCGTACGA CGCCTCCCCC GCCCGCCTCT CCCCGACCTC 
    GTCGCCGGCG ATGGCCTCCG CCTCCACCGC CGTGGCCAGC GCCACCGCCG 
    GGACCACCCG TTCCTTCGAG AAGCTATCTG CCCCATGGAT GATAGGCCGG 
    GGACACGTGG CGCTCCCCCC GTCGCCGGGG CGTTATCCCG CGGTCACGGT 
    GGCCGCGGCG TCGCGTCGCA CCGGCGAAGG TGGGAGGAGG CGGAGGAGAG 
    CCAGGGGTGC TGATCAGGAG GATGGCCTCT CCCTCAGCTC CGAAATTGAG 
    GCATCAAGTT CCACTCCCCC CGTTCGCACT ACCGACAAGG AGAGCACGAA 
    ACCTGCATCA GAAACCGGAA TCACAAAGAA AGGATCAGCC ATTAGAAGAG 
    TTACTTTGGT GGTCCTTGCT GCGGTTTTCT TCGGCGTTAG CATCGCCCTG 
    AGGGATGGGG TTGGGAAGGC ATCTGAATAT TTTGCTGGAT ATTTATTGGA 
    ACAGAGTTTG TCAGTAGACA ATCTCTTTGT TTTTGTTCTG GTCTTCAAGT 
    ATTTTAAAGT GCCACAGGAA TACCAGAACC GGGTGCTCTC TTATGGTATT 
    GCTGGAGCAG TGATCTTCCG CACGGTGATG ATCACCCTAG GAGCAGCTAC 
    GATTCAGAGG TTTGAAGCAG TGAACCTATT ATTGGCTTTG ATCCTGCTAT 
    TCACTTCATA TAAGTTATTT GCTGAAGAAG ATGAAGAATC TGATCTATCT 
    GACAATTTCA TAGTGAAAAC ATGCCAAAGA TTCATTCCTG TCACTGATTA 
    CTACGATGGT GATCGGTTTT TCACAACTCA AGAAGGTTTA TGGAAAGCCA 
    CACCTTTGCT GTTGACTGTG GCAGTGATCG AACTAAGTGA TATTGCTTTC 
    GCTATTGACT CAATACCAGC AGTTTTTGGT GTCACAAGGG ATCCACTTAT 
    AGTGTTATCA TCAAATATTT TTGCTATTTC TGGTTTGAGG TCACTCTACG 
    TACTCATTTC TGAAAGCATG TCTGAATTGG ACTATTTGCA GCCTGCAATT 
    GGTATAGTTT TGGGCTTCAT AGGGACAAAG ATGGTCTTTG ACTTTTTTGG 
    TTATCATATA CCAACTGAAG CTTCGCTTGC TATTGTTACC ACGTGTCTAA 
    GTGGTGGAGT AATATTGAGT CTTAGGAAAG CATCAACTGA AGAAAAGGAC 
    AAGTAGCCGG CTTGCTGGAG AGGAGGTCGA ATGAAAATAC TGCTTCCTGA 
    GAGCTGCTCC TTTTATCTGG ATGCAGGGGT TCATCAATGC ATCATTTACT 
    TTGATCACCA GATGTAGAGC AGTAGAGGAG GTCCTTGAGG AGTTTTCACA 
    AGACGACCAC TGGGCTTGTA CGTATAGTAA TGCTCGTGTG GTTTTGAAGG 
    CAAATCACAA CCAGTGGTTT TGATGTGTGA CCCAGTATAG AATTATGAGG 
    TTGATGACTG CCAAGGCATG AAGACTGGTG TCTGACATCC AAATTTAAGG 
    CCATGTACGC CTTGGTTCGT CTTGAAGCAG AAGGGTTAGT GGAAGATCCA 
    AAACAGCAGC AGCCTACTAG GATGACTGAC TGGCATGGTA ATCATAATTC 
    TTCCCCTTTT TTTTGAGCTT GTAAAACAAG CTCACAAGCA TGACATGCAC 
    AAGCAATGTC AAATTTTATT GCAACAAAAC ATATGGTGTA TAGCTGACCA 
    TTATATTTTG GTTCGTTTAG CTACTGATCC TTATTATGTG GTTATATTAA 
    ACTGTTGTGA TTCGTGGGTC TGAGAGCATT ATCTGAAATC CCTTGCAAC

    Gene models with high sequence identity

    1. AT5G12130.1 [+] show detail - integral membrane TerC family protein
      E-value: 1e-94; Score: 344.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Integral membrane protein TerC, riboswitch-linked 5.2e-95
    HMMPfam Integral membrane protein TerC 1.4e-51

    See the detailed result >

    AT5G12130.1

    Model type
    Protein coding
    Short Description
    integral membrane TerC family protein
    Computational Description
    PIGMENT DEFECTIVE 149 (PDE149); CONTAINS InterPro DOMAIN/s: Integral membrane protein TerC (InterPro:IPR005496), Integral membrane protein TerC, riboswitch-linked (InterPro:IPR022369); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR