K18121

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18121

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18121

Determination of introduced cDNA(s)

  • J013022J10 - Rice Full-length cDNAs - Original: J013022J10

    full reading [+] show sequence

    Nucleotide sequence: J013022J10 - full reading 
    GAACATTTGG CTAAAAAATT TTCGAGCCAA AAACTTTACC AAAATCCTCC 
    GAAATTCCTG CGTCTTTCAG CTCGGATCAG GCATTCAGGC CCTTCTCCCC 
    GCCAGGATCG GTGGATGGAG ATCATCAACG GGCCGGTTCT CCCGCGCTAT 
    GCTGCTCCGG CGACCGGCGC CCTGACCTCC GACGCGAAGA TCAGCGGGCA 
    GCTGCTTAGG CGCGTGCACC TGAGGAGACG AGCCTGTGGG TTGCAGGGAG 
    ACCACTACCG GGCGGCGCGC AGGTTCTTCG GTTTCCCGTC CGAGCGGCAT 
    GCGCGAAGCG GCTGGGTCTG GCCTGTTTGT TGCAGTTACG GCTCGTCTTC 
    CGACGGGGAC GGCGCCGCTG CCGCGGATTA CGACGCCAGC GGCGAGGAGT 
    TCGTCAACTC CAGCGTGATG GAGGCTGTTG AGCTCAGAAG TGTATCTGAT 
    GGATTTGTGA TTAAAATGCG TGATGGCAAA AACCTTAGAT GTGTCCAAAA 
    CAACCCGCGG GTATTAAGAT TGCGGGATTC TGCACCTCAC CATGCTATTG 
    TTCTGAAGAT GGAAGATGGA AGTGATCTTT TGCTTCCAAT TATCGTCATG 
    GAAACACCAA GTATTATGTT GCTGGCTGCC CTTCGGAACA TTCGAATTCC 
    AAGGCCAACT ATTTATAATG TGGTAAAGGA GATGACCGAA AGGATGGGAT 
    ATGCGGTACG TTTGGTGCGG ATTACAGAAA TGGTCCATGA TGCATACTAT 
    TCTCGATTGT ATCTTGCTAA GATTGGCAAT GAAGAGGAGA CTATTAGCTT 
    AGATCTCAAG CCATCAGATG CCATCAACAT TGCTTTCCGG TGTAAGGTTC 
    CTATACAAGT GAATAGGCGT ATAGCGTATA ACAATGGATT GAAAGTTGTA 
    CAACCAACAC CATCTGAGAG CTATGTAAGC TCAGACCAAT TCCAATACAC 
    AAGACTTGAC AGGCCTGACG ATCAACCTTG CTTTGAGGCC CAAGAGTTTG 
    ATTTGGTCCG CAATATGCTG GTCGCTGCTG TTGAGGAACG CTACAAAGAT 
    GCTGCTCAAT ACAGAGATCA GCTTTTCATG TTCCGGGCAA AGAAAAAGAA 
    CATGATTTAA CAGTTCCTGA AGGGAGGTGT ACATACTAGT CCCGCCTGAA 
    GTGCATAAAG CCAAACATCA AGAAGAACTT TGTAAATACT TACAGAAGAA 
    CCTATACATA GATACATATA CATACTAGAA CATGATTTTG GGTGCTTTCA 
    ATTCGTGGTG GCGTTGGTAG TAAAATTGAC TCAAAAGGTG CCCATGTTTG 
    TCACTCACGA TTGATTTTAG CAAAACGTTA AGCAAATTGC TTTACACG

    Gene models with high sequence identity

    1. AT1G19660.2 [+] show detail - Wound-responsive family protein
      E-value: 2e-77; Score: 286.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein of unknown function DUF151 1.7e-37
    HMMPfam Protein of unknown function DUF151 2.3e-21

    See the detailed result >

    AT1G19660.2

    Model type
    Protein coding
    Short Description
    Wound-responsive family protein
    Computational Description
    Wound-responsive family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to wounding, nucleotide-excision repair; EXPRESSED IN: ovule; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: bifunctional nuclease in basal defense response 1 (TAIR:AT1G75380.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR