K18145

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18145

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18145

Determination of introduced cDNA(s)

  • J023014I18 - Rice Full-length cDNAs - Original: J023014I18

    full reading [+] show sequence

    Nucleotide sequence: J023014I18 - full reading 
    GATTGCAGCC GCCGCCGCTC CCAGCTCGCG CTCCCCTCGC CGCCGCAGCC 
    GCCGCCGCCT CGCCTCCTCG GAGATCTTCG CTGCCCTTCC GTCAACATGG 
    GGAAGACACG TGGTATGGGA GCTGGGCGCA AGCTCAAGAC CCACCGCAGG 
    AACCAGAGAT GGGCAGACAA GGCCTACAAG AAGAGCCACT TGGGTAATGA 
    GTGGAAGAAA CCCTTTGCTG GGTCATCTCA TGCCAAGGGC ATCGTTCTGG 
    AGAAGATTGG TATTGAGGCC AAGCAGCCCA ACTCTGCCAT CCGTAAGTGT 
    GCTCGTGTGC AGCTTGTGAA GAATGGGAAG AAGATTGCTG CCTTTGTGCC 
    CAATGACGGT TGCCTGAACT TCATTGAGGA AAATGACGAG GTGTTGATTG 
    CTGGATTTGG TCGTAAGGGC CATGCTGTGG GAGATATTCC TGGTGTCCGG 
    TTCAAGGTCG TCAAGGTCTC TGGTGTGTCT CTGCTTGCTC TCTTCAAGGA 
    GAAGAAGGAG AAGCCGAGGT CTTAGATTAC TGGTACATCT TGGTTGGCAA 
    GCATGGAATA GACAGAATGA AAGGCTTTAG ATGCTCAAGA ATGAAGGCTT 
    TAGATGCTCA AGAAGATGGT TCCTTGCTAT GTTTAAAGTG CGCTCTTTAT 
    ATTGTTAACT TAAGATTGTG TTGGTAAAAA CCATGCCTTG TCAGATTTTT 
    GCTTCTGTTA AGGGGAAAGT ACTGTGCTGA GCTATTTTCT CCG

    Gene models with high sequence identity

    1. AT5G02960.1 [+] show detail - Ribosomal protein S12/S23 family protein
      E-value: 1e-74; Score: 276.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Nucleic acid-binding, OB-fold 6e-22
    superfamily Nucleic acid-binding, OB-fold-like 9.7e-33
    HMMPanther 40S RIBOSOMAL PROTEIN S23 1.8e-55
    HMMPanther Ribosomal protein S12/S23 1.8e-55
    PatternScan Ribosomal protein S12/S23 0
    HMMTigr Ribosomal protein S23, eukaryotic/archaeal 1.7e-59
    HMMPfam Ribosomal protein S12/S23 9.1e-41

    See the detailed result >

    AT5G02960.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein S12/S23 family protein
    Computational Description
    Ribosomal protein S12/S23 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein S23, eukaryotic/archaeal (InterPro:IPR005680), Ribosomal protein S12/S23 (InterPro:IPR006032), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340); BEST Arabidopsis thaliana protein match is: Ribosomal protein S12/S23 family protein (TAIR:AT3G09680.1); Has 9074 Blast hits to 9071 proteins in 3107 species: Archae - 259; Bacteria - 5125; Metazoa - 487; Fungi - 294; Plants - 977; Viruses - 0; Other Eukaryotes - 1932 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR