K18301

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	fruit (PO:0009001)	decreased length (PATO:0000574) (Silique::Shape::short) abnormal (PATO:0000460) (Silique::Others)
	stem (PO:0009047)	abnormal (PATO:0000460) (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18301

Determination of introduced cDNA(s)

J023048E13 - Rice Full-length cDNAs - Original: J023048E13

full reading [+] show sequence

GACGAGTTCC TCGCTCTGCT CGACGACCCG CGCGTCCCCA AGGCAACGAC 
GTTCGACCAG GTGCAGCACG AGGTCGACCG GTGCGTCCTC CCCGCGTCGG 
TGGACGTCGG GGCCGGAGTC GGGGAGTCCG CGCCGCCGTA CCCGCCTGAG 
ACGGTCGACC GGCTCCGGTC CATGGCCGAC GCCATGGTCA CCGCCGGGTA 
CGTGACGGAG TGCACCCAGA TGTTCCTGGT GGCTCGCCGG AACGCGTCCG 
ACGCGTCGCT GCGCGCGCTC GGGTACGAGA AGGCGAGCAT CGACGACGTA 
GTGAAGATGA CGTGGGAGGC GCTGGAGGCG GAGATCGCGA CGTGGACCAA 
GGCGTTCCGG CACACCATCA ACGTCGGCCT CTCCACCGAG CACGACCTCT 
GCGCCCGCGT GTTCGCCGGC CGCCACGCCG CCGTCGGGCG GGGCATGTTC 
GCCGACCTCG CCCGCTGCGT CATGCTCCAC ATGCTCAACT TCACGGAGGC 
GGTGACCATG ACGAAGCGCG CCGCGGAGAA GCTCTTCAAG GTGCTCGACA 
TGTACGAGGC CACCCGCGAC GCGTCCCCGG TCATCGACGC CTTCCTCACC 
GCCGACGACG GCAACAACAG CACCGCCCTG ACCGACCTCA AGCACGAGCT 
CAACTCCGTC CGCTCCCGCC TCGGCGAGTT CGCCGCCGCC ATCTTCCGCG 
AGCTCGAGAG CTCCATCCGC GCCGACGCCG GCAAGCAGCC CGTCCCGGGC 
GGCGCCGTGC ACCCGCTCAC CCGCTACGTC ATGAACTACC TCAAGTACGC 
GTGCGAGTAC AACAGCACGC TGGAGCAGGT GTTCCGGGAG CACGGCGCCC 
ATGGCGGCGG CGGCGGCGGC GACGGCGAGA ACCCGTTCGC GGCGCAGCTG 
ATGGAGGTGA TGGAGCTCCT CCACGGCAAC CTGGAAGGGA AATCGCGGCT 
CTACAAGGAC CCATCACTGA GCAACATCTT CCTGATGAAC AATGGGAGGT 
ACATGCTGCA GAAGATCAGG GGCTCGCCGG AGACGAACGC CATGCTCGGC 
GAGGCGTGGG CGAGGAAGCA GTCGACCAAC CTGAGGCAGT ACCACAAGAA 
CTACCAGCGG GAGACGTGGA GCCGCGTGCT CGGCCTGCTC CGCGACGACG 
GCGTGCTGAC GGTGAAGGGG TCGGTGCAGA AGCCGGTGCT CAAGGAGAGG 
TTCAAGCAAT TCAACGCAGC CATGGACGAG ATCCAGAGGA CGCAGGGCGC 
GTGGGTGGTG AGCGACGAGC AGCTGCAGTC GGAGCTCAGG GTGTCCATCG 
CCGCCGTCGT CGTGCCGGCT TACCGCTCCT TCCTCGGCCG CTTCGCGCAG 
ACGTTCAGCG CCGGGAGGCA GTCGGAGAAG TACGTCAAGC TCAGCGCCGA 
CGACGTCGAG GCCATCATCG ACGAGCTCTT CGACGGCAAC GCCACCTCCA 
TGACTAGGAG GCGGACATAG CAACACAACT AAATCGCCGC CGCGAGCGCA 
ACCGCAGATG GATCAGAATG CGCGGGAAGA AGAAGGAGGA GGATTAATTT 
GAGCTGATTA TAATTTCTTG GCTTAAGCCA TGTGTTAATT ATTTTGTTTT 
TTTCTTCTTA TGTTCTTTTC TTCTTCTTTT TTTCTGGTTA AGAATGTTAA 
TTCGATCGGT CGAACAGGTG ATGTACTACT AATTGTTACT GGATTATCTC 
AGGGCAGATA GGTTTATGTA TCCATTATTA ATCCATGTAC TTAATTTTAC 
CCGATGAAAT TGAGCTTTTT TTCTTTGTTG TT

Gene models with high sequence identity

AT5G13150.1 [+] show detail - exocyst subunit exo70 family protein C1
E-value: 4e-124; Score: 442.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	PTHR12542:SF7	1e-126
HMMPanther	Exo70 exocyst complex subunit	1e-126
HMMPfam	Exo70 exocyst complex subunit	5.59999999999999e-99

See the detailed result >

AT5G13150.1

Model type: Protein coding
Short Description: exocyst subunit exo70 family protein C1
Curator Summary: A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.
Computational Description: exocyst subunit exo70 family protein C1 (EXO70C1); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: exocyst; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein C2 (TAIR:AT5G13990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR