K18324

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	low brightness (PATO:0000327) (Seed::Color::dark)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18324

Determination of introduced cDNA(s)

J023048G03 - Rice Full-length cDNAs - Original: J023048G03

full reading [+] show sequence

AAAAGCGCTT CTTCACTCGA TCTCGCCGCG AGAGACCCAC CGATCTGCCC 
TCCGCCCCCC AACATGGCGA CGCCACCGCC GCTCCGCCGC GTCGCCGCCC 
TCCTCCTCCT CCTCGTCGCC GCCGCCTCCA CCCCCACCGC ACGGGCCGAT 
CTCGTCGTCA CCAGGGCGGA TCGGAAGGTT GACCTGACTT CGCACATCGT 
TCGTGTCCTC ACTTCGCTCA AGGTTGAGAA TAGTGGACCG GAGGCTGTTT 
CTCAATTTCT ACTGGCGTTT CCCAATGTCC AAGCAAAGAA CTTAGCAGCT 
ATAAGAGCAT TTGGTACTGA GGAAAAGGTG AAAGGTCCAA GTATGGTCCT 
TCCGATTGAA GTTGTTCAGC CTTCTGGAGT GCCCCCAGAA CTTACATTCT 
TTTCGGCATC TTTATCCAAA CCTTTGGAGA AGGGGAAGAC TCTTCACTTA 
GATGTCCTGA CCGTATTTAC GCACTCTGTC CAGCCATTCC CCGAAGAAAT 
CACACAAGCT GAATCGCAGC TTGTTGTCTA TCAGGACAGT GCTCAGTATC 
TGTCACCTTA CCCTGTTAAG GTACAGACAC TTAGTATCAG ATTGCCTGGT 
GGAAGAGTTG AGTCCTACAC AAAGTACCCA AACACAAAAC TTGCAGAGTC 
AGAACTAAAA TATGGACCAT ATGAAGATCT TCCACCGTTT TCCTACTCCC 
CTATGGTTGT GCACTATGAG AACAATAACC CTTTTGCAGT TGCAAAGGAA 
GTTATAAGGG AGATAGAGAT ATCTCACTGG GGGAATGTAC AGATTACAGA 
ACATTACAAC ATTGCTCATG GTGGTGCCAA ACTCAAGGGT GAATTTTCCA 
GGATTGATTA CCAATCTAGA CCGTACATAA GAGGGGTCTC ATCTTTTAGG 
CATCTTATTG CTAGACTGCC TCCAAGGGCA CATTCTATAT ACTACAGAGA 
TGAGATTGGT AACATTTCAA CATCACATTT ATGGAGTGAT TCCAAGAAGA 
CTCAACTTGA AGTTGAGCCA AGGTTTCCTT TGTTTGGTGG TTGGCAAACG 
ACCTTTACCA TTGGTTATGG TTTACCTCTT CAAGACTTTG TTTTCAATTC 
TGATGGAAAG AGATTCCTCA ATATCACATT TGGTTCTCCA GTGGAGGAGA 
TTCTCATAGA AAAGCTTATT GTGAAGGTTG TTCTGCCTGA AGGTTCAAAG 
GATATTGATA TTTCAGTTCC ATTTCCAACA AAGCAAGAGC AAGAGGTGAA 
GTATTCACAC CTTGATATTT CTGGAAGGCC AGTGGTTGTC TTGGAGAAGC 
TTGATGTTAT TCCAGAGCAT AATCTATATT TCCAGGTTTA CTACAGGTTC 
AACAACATCT CTCTACTCAG AGAACCGATG ATGTTGATAA CTGGCTTCTT 
TCTCCTCTTC ATGGCCTGTA TTGTTTACAT GCGCACTGAC ATGTCAATCT 
CTAAGAATTC TCCTTCTTAT CTGGCAAAGG TGCAGTGGGA TGAGGTACAG 
AGCATCATCC AGCAAATCCA GGCTATCTTC AACCAATGTC TAGCAGCTCA 
TGATAAACTG GAGACCTCAT TACACGAGTT ATCTAGGTCA GGGGATGTTA 
AATCATGCAA AGTGGCTCGT AAGACAGCTG ATGCACAGTT TAAGGAATTA 
GCAAAAGAGT TGAAGCCATT GTTGACATCC CTGCAGTCAT CCTCTCAGTC 
TTACCAGATA TGGCCAAAGG TAGAGGAATT GGTTGCCAAG GAGAGAGAGT 
TGCAGGATAA GCTCATGACA AGGCATTCCA CTGTGGTTGA CAGCTTTGAA 
AAGAAGTTGC GAGGGCAAGA TGTGGAGAAC AGGATTGCTG CCCAGCAGCA 
GAAAGTTGCT GCCCTGAGGC AAGAGGTCGA ATCTCTTTTA GAGTACATCA 
GTGAGATCTG AGCGAATCCG GCGCTGCATG GTATGTCAAT TTAGCAATTA 
GACTGGAGAA TGGATCACCT GGTTTCTCAT TGTGCGAATT TGATATGCTC 
GAATTCGAAT CAAATACTCG TAGATTTCCT GTTGATAACC TGTCTCAGTC 
ATTCAGGCTG GGAGTTTCAA AGGACCTTGT AACATGATAA GCACTTGTGA 
CCGCCTGAAA CTGATTGAAA TTTTGCACTT AATAGCAAAT CACGCGACCT 
TTCACCTTGT TTC

Gene models with high sequence identity

AT1G76400.1 [+] show detail - Ribophorin I
E-value: 0; Score: 751.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Ribophorin I	3.1e-171
HMMPfam	Ribophorin I	9.8e-142
Coil	coiled-coil	0

See the detailed result >

AT1G76400.1

Model type: Protein coding
Short Description: Ribophorin I
Computational Description: Ribophorin I; FUNCTIONS IN: oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribophorin I (InterPro:IPR007676); BEST Arabidopsis thaliana protein match is: Ribophorin I (TAIR:AT2G01720.1); Has 398 Blast hits to 398 proteins in 180 species: Archae - 2; Bacteria - 2; Metazoa - 149; Fungi - 127; Plants - 63; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Link: InterPro Scan - TAIR