K18405

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18405

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18405

Determination of introduced cDNA(s)

  • J033076L03 - Rice Full-length cDNAs - Original: J033076L03

    full reading [+] show sequence

    Nucleotide sequence: J033076L03 - full reading 
    GAGAGCGAGG AGAGAGAGAG ATAGGGAGAG GGATTTCGAT TTTTTTTTCT 
    CCACGGCGAA ATCCGCGAGG CGGAGGAGGA GGAGGAGGGC GAGATGGGGG 
    CGGCGGAATC CGTGCCGGAG ACCTCCATAT ACGAATTCAC CGTCAAGGAT 
    TGCAACGGCA AGGAGGTGAG CCTGGAGATG TACAAGGGGA AGGTGCTAAT 
    CGTCGTCAAC GTCGCCTCCA AATGTGGGTT CACGGAGACC AACTACACGC 
    AGCTGACGGA GCTCTATCAG AAACACAGGG ACAAAGATTT TGAGATTCTA 
    GCATTTCCCT GCAATCAGTT CTTGCGACAA GAGCCAGGAT CTGACCAGCA 
    AATAAAGGAT TTTGCTTGCA CAAGATTTAA AGCTGAATAT CCCGTTTTTC 
    AGAAGGTGCG TGTAAATGGT CCTGATGCTG CACCACTTTA CAAATTTTTG 
    AAAGCTAGCA AGCCTGGCTT GTTTGGATCT AGAATCAAGT GGAACTTTAC 
    CAAATTTCTT ATTGATAAGA ATGGCAAAGT CATTAACAGA TACTCGACTG 
    CGACCAGTCC CTTGTCTTTT GAGAAAGACA TCCTGAAGGC GCTCGAGGAT 
    TAGATCTCGT ACCCTCCCCC ATCCTTCATT TGCAGAAGTA GGCAAAGTAT 
    CTGGTTGTAA TATCTAGACC TATGGGATGC TCAATAGTGA ATTTTTGCAA 
    TATATTCCTT CTTTTGTGTA GTGTATTTGT TGTCTTTATA TATTATTATA 
    TTGTAAGTAG AGGTTGGCTG GTTGGGTAGG CACTGTTTTG TCTATACTGG 
    TTTTATATGG CTTGGCTTGA AAATTTGTTT AGAAACCTAA GACATTATTA 
    TCAACGTGTA ATATCGACAA GTTGAAATTG T

    Gene models with high sequence identity

    1. AT2G48150.1 [+] show detail - glutathione peroxidase 4
      E-value: 2e-69; Score: 259.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glutathione peroxidase 0
    PatternScan Glutathione peroxidase 0
    Gene3D Thioredoxin fold 1.6e-63
    ProfileScan Glutathione peroxidase 70.961
    HMMPanther Glutathione peroxidase 7.7e-94
    superfamily Thioredoxin-like fold 3.4e-61
    FPrintScan Glutathione peroxidase 1.3e-20
    FPrintScan Glutathione peroxidase 1.3e-20
    FPrintScan Glutathione peroxidase 1.3e-20
    HMMPIR Glutathione peroxidase 1.2e-76
    HMMPfam Glutathione peroxidase 2.2e-43

    See the detailed result >

    AT2G48150.1

    Model type
    Protein coding
    Short Description
    glutathione peroxidase 4
    Curator Summary
    Encodes glutathione peroxidase.
    Computational Description
    glutathione peroxidase 4 (GPX4); FUNCTIONS IN: glutathione peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress, N-terminal protein myristoylation; LOCATED IN: cytosol; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like fold (InterPro:IPR012336), Glutathione peroxidase (InterPro:IPR000889); BEST Arabidopsis thaliana protein match is: glutathione peroxidase 5 (TAIR:AT3G63080.1); Has 7346 Blast hits to 7345 proteins in 1724 species: Archae - 2; Bacteria - 3554; Metazoa - 785; Fungi - 210; Plants - 383; Viruses - 8; Other Eukaryotes - 2404 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR