K18423

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K18423

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K18423

Determination of introduced cDNA(s)

  • J033076O08 - Rice Full-length cDNAs - Original: J033076O08

    full reading [+] show sequence

    Nucleotide sequence: J033076O08 - full reading 
    TGACGCCGCT TCAGTTTGAA AACCCACCGC CACGTCGCCG CCGCCGCCGC 
    CGCCGCCGCC GACGCCGAGA TGGCTCGCAC GAAGCACCCG GCGGTGAGGA 
    AGTCGAAGGC GGGGCCCAAG AAGAAGCTCC AGTTCGAACG CTCCCCTCGG 
    CCGTCGAAGG CGCAGCGCGC TGGTGGCGGC ACGGGTACCT CGGCGACCAC 
    GAGGAGCGCG GCTGGAACAT CGGCTTCAGG GACGCCTAGG CAGCAAACGA 
    AGCAGAGGAA GCCACACCGC TTCCGTCCAG GCACAGTGGC ACTGCGGGAG 
    ATCAGGAAAT TTCAGAAAAC CACCGAACTG CTGATCCCGT TTGCACCATT 
    TTCTCGGCTG GTCAGGGAGA TCACTGATTT CTATTCAAAG GATGTGTCAC 
    GGTGGACCCT TGAAGCTCTC CTTGCATTGC AAGAGGCAGC AGAATACCAC 
    TTAGTGGACA TATTTGAAGT GTCAAATCTC TGCGCCATCC ATGCTAAGCG 
    TGTTACCATC ATGCAAAAGG ACATGCAACT TGCCAGGCGT ATCGGTGGGC 
    GGAGGCCATG GTGAAAATTT GTTTGCGAGC CATGCAGCAT GATGGACAAG 
    GAGCAACATG TGTCGTTGAT TAACATTTTA GAAAGTAGTG TAGATGTATC 
    TTCACATAGG GATCAACTTA CCCTTCGTTC CCATTCTAAT TCAGTTGATG 
    TTAGTATTTA CCTTTTGCTC CATTTGGATT GGTCGAATTC AGGATTTCAT 
    CAAACAGTCG ATTGTGAAAT GTGAACCAGG AATTGTTGTG TTGATTGC

    Gene models with high sequence identity

    1. AT1G75600.1 [+] show detail - Histone superfamily protein
      E-value: 2e-25; Score: 113.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Histone-fold 8.4e-47
    HMMPfam Histone core 4.6e-25
    superfamily Histone-fold 2.1e-36
    HMMSmart Histone H3 2e-50
    PatternScan Histone H3 0
    FPrintScan Histone H3 5e-16
    FPrintScan Histone H3 5e-16
    FPrintScan Histone H3 5e-16
    HMMPanther Histone H3 1.6e-64

    See the detailed result >

    AT1G75600.1

    Model type
    Protein coding
    Short Description
    Histone superfamily protein
    Computational Description
    Histone superfamily protein; FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleosome; EXPRESSED IN: root, flower, leaf, pollen tube; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: Histone superfamily protein (TAIR:AT4G40030.2); Has 14606 Blast hits to 14598 proteins in 7248 species: Archae - 0; Bacteria - 0; Metazoa - 10603; Fungi - 2033; Plants - 1270; Viruses - 0; Other Eukaryotes - 700 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR